Variant report

Variant	rs224154
Chromosome Location	chr20:24185859-24185860
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24185798..24186480-chr20:24761761..24762538,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs127801	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2013711	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2208013	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs224153	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2644846	0.80[ASN][1000 genomes]
rs2749424	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2749427	0.82[ASN][1000 genomes]
rs2749459	0.80[ASN][1000 genomes]
rs472526	0.82[ASN][1000 genomes]
rs473253	0.82[ASN][1000 genomes]
rs482337	0.82[ASN][1000 genomes]
rs485747	0.83[ASN][1000 genomes]
rs492884	0.82[ASN][1000 genomes]
rs494639	0.82[ASN][1000 genomes]
rs501262	0.82[ASN][1000 genomes]
rs502250	0.80[ASN][1000 genomes]
rs504500	0.82[ASN][1000 genomes]
rs504964	0.82[ASN][1000 genomes]
rs512615	0.80[ASN][1000 genomes]
rs512754	0.83[ASN][1000 genomes]
rs513654	0.83[ASN][1000 genomes]
rs523233	0.80[ASN][1000 genomes]
rs525009	0.80[ASN][1000 genomes]
rs527873	0.80[ASN][1000 genomes]
rs529793	0.80[ASN][1000 genomes]
rs530523	0.80[ASN][1000 genomes]
rs530615	0.80[ASN][1000 genomes]
rs531361	0.82[ASN][1000 genomes]
rs546094	0.80[ASN][1000 genomes]
rs546946	0.80[ASN][1000 genomes]
rs547449	0.80[ASN][1000 genomes]
rs550792	0.80[ASN][1000 genomes]
rs562594	0.82[ASN][1000 genomes]
rs563102	0.83[ASN][1000 genomes]
rs564245	0.82[ASN][1000 genomes]
rs564337	0.82[ASN][1000 genomes]
rs565074	0.82[ASN][1000 genomes]
rs565833	0.83[ASN][1000 genomes]
rs566047	0.82[ASN][1000 genomes]
rs566089	0.82[ASN][1000 genomes]
rs570480	0.83[ASN][1000 genomes]
rs572702	0.80[ASN][1000 genomes]
rs573964	0.82[ASN][1000 genomes]
rs576373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6036670	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6049453	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6049454	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6049455	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6049458	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6049460	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6049461	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6049467	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6049501	0.82[ASN][1000 genomes]
rs6049502	0.82[ASN][1000 genomes]
rs6049504	0.82[ASN][1000 genomes]
rs6114503	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6114507	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6114508	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6114509	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6138237	0.82[ASN][1000 genomes]
rs85687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs85689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs910780	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs910781	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv833945	chr20:24163437-24349462	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24184800-24188600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24185400-24188800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr20:24185600-24186200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr20:24185800-24186000	Enhancers	H1 Cell Line	embryonic stem cell

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