Variant report

Variant	rs127801
Chromosome Location	chr20:24179608-24179609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:24179269-24179620	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
ENSG00000230133	TF binding region

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1496400	0.85[CEU][hapmap]
rs1587200	0.84[CEU][hapmap]
rs1884520	0.85[EUR][1000 genomes]
rs1884521	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2013711	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2208013	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs224151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs224153	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs224154	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2644845	0.80[CHB][hapmap]
rs2749424	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2749459	0.82[CHB][hapmap]
rs2890401	0.89[EUR][1000 genomes]
rs485747	0.81[ASN][1000 genomes]
rs491653	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs495354	0.81[CHB][hapmap]
rs496268	0.81[CHB][hapmap]
rs502250	0.81[ASN][1000 genomes]
rs512754	0.81[ASN][1000 genomes]
rs513654	0.80[ASN][1000 genomes]
rs529070	0.81[CHB][hapmap]
rs563102	0.81[ASN][1000 genomes]
rs565833	0.81[ASN][1000 genomes]
rs570480	0.81[ASN][1000 genomes]
rs576373	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6036665	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6036668	0.85[EUR][1000 genomes]
rs6036670	0.84[EUR][1000 genomes]
rs6049429	0.89[EUR][1000 genomes]
rs6049432	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes]
rs6049433	0.81[CEU][hapmap]
rs6049434	0.89[EUR][1000 genomes]
rs6049435	0.89[EUR][1000 genomes]
rs6049439	0.90[EUR][1000 genomes]
rs6049443	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6049446	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6049453	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6049454	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6049455	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6049458	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6049460	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6049461	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6049467	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6083394	0.89[EUR][1000 genomes]
rs6083397	0.89[EUR][1000 genomes]
rs6114503	0.80[EUR][1000 genomes]
rs6114507	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6114508	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6114509	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs761868	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs761869	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs761870	0.89[EUR][1000 genomes]
rs85687	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs85689	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs858072	0.80[CHB][hapmap]
rs910780	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs910781	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv833945	chr20:24163437-24349462	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24179400-24180200	Enhancers	Placenta Amnion	Placenta Amnion
2	chr20:24179400-24180400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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