Variant report

Variant	rs761869
Chromosome Location	chr20:24128315-24128316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs127801	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1884520	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1884521	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2013711	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2208013	0.91[ASN][1000 genomes]
rs224151	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs224153	0.90[EUR][1000 genomes]
rs2644845	0.80[CHB][hapmap]
rs2749424	0.86[EUR][1000 genomes]
rs2749459	0.82[CHB][hapmap]
rs2890401	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs491653	0.81[CHB][hapmap]
rs495354	0.81[CHB][hapmap]
rs496268	0.81[CHB][hapmap]
rs529070	0.81[CHB][hapmap]
rs6036665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036668	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6036670	0.84[ASN][1000 genomes]
rs6049429	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049433	0.92[CEU][hapmap]
rs6049434	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049435	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049439	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049443	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049446	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6049453	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6049454	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6049455	0.91[ASN][1000 genomes]
rs6049458	0.91[ASN][1000 genomes]
rs6049460	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6049461	0.89[ASN][1000 genomes]
rs6049467	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6083394	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083397	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114503	0.94[ASN][1000 genomes]
rs6114507	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6114508	0.89[ASN][1000 genomes]
rs6114509	0.89[ASN][1000 genomes]
rs761868	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761870	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs858072	0.80[CHB][hapmap]
rs910780	0.89[ASN][1000 genomes]
rs910781	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2755330	chr20:24114903-24130700	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24123400-24130800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr20:24125000-24129000	Weak transcription	Esophagus	oesophagus
3	chr20:24126400-24128600	Enhancers	Liver	Liver
4	chr20:24127200-24130000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr20:24127200-24130200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr20:24127400-24128400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr20:24127400-24129200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr20:24127400-24129600	Weak transcription	NHEK	skin
9	chr20:24127400-24130600	Weak transcription	Pancreas	Pancrea
10	chr20:24128000-24131200	ZNF genes & repeats	Dnd41	blood
11	chr20:24128200-24129200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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