Variant report

Variant rs2241717
Chromosome Location chr19:41854052-41854053
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:41818600-41854800 Strong transcription Dnd41 blood
2 chr19:41832400-41856000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
3 chr19:41834200-41856600 Weak transcription Brain Anterior Caudate brain
4 chr19:41834200-41856800 Weak transcription Fetal Kidney kidney
5 chr19:41834400-41854800 Weak transcription Small Intestine intestine
6 chr19:41834800-41855600 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr19:41834800-41856800 Weak transcription Brain Cingulate Gyrus brain
8 chr19:41834800-41856800 Weak transcription Brain Substantia Nigra brain
9 chr19:41835000-41854400 Strong transcription Fetal Stomach stomach
10 chr19:41835000-41856600 Weak transcription Brain Inferior Temporal Lobe brain
11 chr19:41835000-41856800 Weak transcription Brain Angular Gyrus brain
12 chr19:41835600-41856000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr19:41836000-41855200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr19:41837800-41855800 Weak transcription HUES64 Cell Line embryonic stem cell
15 chr19:41838600-41856600 Weak transcription ES-I3 Cell Line embryonic stem cell
16 chr19:41840400-41854600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr19:41840800-41855800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr19:41841800-41856600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
19 chr19:41843400-41854600 Strong transcription HUVEC blood vessel
20 chr19:41844200-41854200 Strong transcription Thymus Thymus
21 chr19:41845800-41856000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
22 chr19:41846400-41854400 Genic enhancers Primary T helper cells fromperipheralblood blood
23 chr19:41846400-41854800 Genic enhancers Primary T cells fromperipheralblood blood
24 chr19:41846400-41855000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr19:41846400-41855000 Genic enhancers Primary T helper 17 cells PMA-I stimulated --
26 chr19:41846600-41854200 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr19:41846600-41854400 Genic enhancers Primary T helper memory cells from peripheral blood 1 blood
28 chr19:41846800-41854400 Strong transcription Stomach Smooth Muscle stomach
29 chr19:41846800-41854800 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
30 chr19:41847000-41855800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr19:41847600-41854400 Strong transcription Osteobl bone
32 chr19:41848200-41854400 Strong transcription Sigmoid Colon Sigmoid Colon
33 chr19:41848200-41854600 Strong transcription Fetal Thymus thymus
34 chr19:41848200-41855000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr19:41848200-41855200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
36 chr19:41848200-41856600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr19:41848200-41856600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
38 chr19:41848200-41857000 Weak transcription Pancreas Pancrea
39 chr19:41848400-41857000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr19:41848800-41855000 Strong transcription K562 blood
41 chr19:41848800-41856000 Strong transcription NHEK skin
42 chr19:41849000-41854400 Strong transcription Adipose Nuclei Adipose
43 chr19:41849200-41854400 Strong transcription Duodenum Smooth Muscle Duodenum
44 chr19:41849400-41854400 Strong transcription Rectal Mucosa Donor 29 rectum
45 chr19:41849600-41854200 Strong transcription Primary hematopoietic stem cells short term culture blood
46 chr19:41849600-41854200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr19:41850000-41854400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr19:41850400-41854400 Strong transcription Spleen Spleen
49 chr19:41850600-41855200 Weak transcription iPS-15b Cell Line embryonic stem cell
50 chr19:41850600-41856800 Weak transcription Breast Myoepithelial Primary Cells Breast

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