Variant report

Variant	rs7258445
Chromosome Location	chr19:41855515-41855516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr19:41855508-41855804	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:41855447..41861218-chr19:41901143..41905435,7	MCF-7	breast:
2	chr19:41854267..41857215-chr19:41859856..41862250,3	MCF-7	breast:
3	chr19:41855237..41861298-chr19:41901562..41905286,5	K562	blood:
4	chr19:41855338..41857886-chr19:41930107..41932844,2	K562	blood:
5	chr19:41825452..41832651-chr19:41855170..41863054,16	K562	blood:
6	chr19:41814701..41816825-chr19:41855352..41857612,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000255730	TF binding region
TGFB1	TF binding region
TMEM91	TF binding region
ENSG00000248098	Chromatin interaction
ENSG00000268475	Chromatin interaction
ENSG00000077348	Chromatin interaction
ENSG00000142039	Chromatin interaction
ENSG00000142046	Chromatin interaction
ENSG00000268987	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10406816	0.89[ASN][1000 genomes]
rs10416269	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12461895	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1549934	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1989457	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2241717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288873	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2288874	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4803455	0.93[ASN][1000 genomes]
rs6508976	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7408955	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8108632	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41832400-41856000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr19:41834200-41856600	Weak transcription	Brain Anterior Caudate	brain
3	chr19:41834200-41856800	Weak transcription	Fetal Kidney	kidney
4	chr19:41834800-41855600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr19:41834800-41856800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr19:41834800-41856800	Weak transcription	Brain Substantia Nigra	brain
7	chr19:41835000-41856600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr19:41835000-41856800	Weak transcription	Brain Angular Gyrus	brain
9	chr19:41835600-41856000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr19:41837800-41855800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr19:41838600-41856600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr19:41840800-41855800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr19:41841800-41856600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr19:41845800-41856000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr19:41847000-41855800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr19:41848200-41856600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr19:41848200-41856600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr19:41848200-41857000	Weak transcription	Pancreas	Pancrea
19	chr19:41848400-41857000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr19:41848800-41856000	Strong transcription	NHEK	skin
21	chr19:41850600-41856800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr19:41850800-41855600	Weak transcription	Fetal Lung	lung
23	chr19:41850800-41856400	Weak transcription	NHLF	lung
24	chr19:41850800-41856600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr19:41851000-41855800	Weak transcription	Right Ventricle	heart
26	chr19:41851000-41856400	Weak transcription	Gastric	stomach
27	chr19:41851000-41856600	Weak transcription	Brain Hippocampus Middle	brain
28	chr19:41851000-41856600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr19:41851000-41856600	Weak transcription	HMEC	breast
30	chr19:41851000-41856600	Weak transcription	HSMM	muscle
31	chr19:41851000-41856800	Weak transcription	Ovary	ovary
32	chr19:41851200-41855800	Weak transcription	Esophagus	oesophagus
33	chr19:41851200-41855800	Weak transcription	Lung	lung
34	chr19:41851200-41856200	Weak transcription	Colonic Mucosa	Colon
35	chr19:41851200-41856400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr19:41851200-41856400	Weak transcription	HepG2	liver
37	chr19:41851200-41856800	Weak transcription	HSMMtube	muscle
38	chr19:41852200-41855800	Strong transcription	A549	lung
39	chr19:41852400-41856000	Genic enhancers	Primary B cells from peripheral blood	blood
40	chr19:41852400-41856600	Weak transcription	NHDF-Ad	bronchial
41	chr19:41853600-41856000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr19:41853600-41856800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr19:41853800-41857000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr19:41854200-41855600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
45	chr19:41854200-41856800	Weak transcription	Aorta	Aorta
46	chr19:41854400-41855800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr19:41854400-41856200	Weak transcription	Fetal Stomach	stomach
48	chr19:41854400-41856600	Weak transcription	Colon Smooth Muscle	Colon
49	chr19:41854400-41856600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr19:41854400-41856600	Weak transcription	Stomach Smooth Muscle	stomach

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