Variant report

Variant rs2241808
Chromosome Location chr3:53856653-53856654
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:53839600-53876600 Weak transcription HUES64 Cell Line embryonic stem cell
2 chr3:53842200-53857200 Strong transcription Fetal Intestine Large intestine
3 chr3:53846600-53879800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr3:53847000-53862000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
5 chr3:53849000-53857200 Strong transcription Duodenum Mucosa Duodenum
6 chr3:53849000-53857800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr3:53849000-53858200 Strong transcription Fetal Stomach stomach
8 chr3:53849000-53858800 Strong transcription Liver Liver
9 chr3:53849000-53859200 Strong transcription Breast Myoepithelial Primary Cells Breast
10 chr3:53849000-53866800 Weak transcription Stomach Mucosa stomach
11 chr3:53849600-53875400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr3:53850600-53857400 Strong transcription Rectal Mucosa Donor 29 rectum
13 chr3:53850800-53858600 Strong transcription Gastric stomach
14 chr3:53851000-53858000 Strong transcription Pancreas Pancrea
15 chr3:53851200-53857400 Strong transcription Rectal Mucosa Donor 31 rectum
16 chr3:53851200-53858000 Strong transcription H1 Cell Line embryonic stem cell
17 chr3:53851600-53858000 Weak transcription ES-I3 Cell Line embryonic stem cell
18 chr3:53852000-53857000 Weak transcription iPS-15b Cell Line embryonic stem cell
19 chr3:53852400-53865000 Weak transcription Aorta Aorta
20 chr3:53852400-53878200 Weak transcription Hela-S3 cervix
21 chr3:53853000-53858200 Strong transcription Fetal Intestine Small intestine
22 chr3:53853000-53858800 Strong transcription Cortex derived primary cultured neurospheres brain
23 chr3:53853200-53867400 Weak transcription Lung lung
24 chr3:53853400-53858200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr3:53853400-53877200 Weak transcription Colonic Mucosa Colon
26 chr3:53853600-53861800 Weak transcription Primary neutrophils fromperipheralblood blood
27 chr3:53853600-53866800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr3:53853800-53856800 Strong transcription Ovary ovary
29 chr3:53853800-53879000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr3:53854000-53879400 Weak transcription H9 Cell Line embryonic stem cell
31 chr3:53854200-53871600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
32 chr3:53854200-53877400 Weak transcription Esophagus oesophagus
33 chr3:53854400-53856800 Enhancers HSMM muscle
34 chr3:53854400-53858000 Weak transcription HUES6 Cell Line embryonic stem cell
35 chr3:53854400-53873000 Weak transcription iPS-18 Cell Line embryonic stem cell
36 chr3:53854400-53876400 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr3:53854600-53858000 Weak transcription iPS-20b Cell Line embryonic stem cell
38 chr3:53854600-53859600 Weak transcription Pancreatic Islets Pancreatic Islet
39 chr3:53854600-53862600 Weak transcription Brain Anterior Caudate brain
40 chr3:53854600-53866600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
41 chr3:53854600-53867400 Weak transcription Spleen Spleen
42 chr3:53854600-53873200 Weak transcription HUES48 Cell Line embryonic stem cell
43 chr3:53854800-53857000 Enhancers HSMMtube muscle
44 chr3:53855000-53856800 Enhancers Skeletal Muscle Female skeletal muscle
45 chr3:53855200-53856800 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr3:53855200-53857000 Genic enhancers Brain Inferior Temporal Lobe brain
47 chr3:53855600-53857200 Enhancers Fetal Muscle Trunk muscle
48 chr3:53855800-53862000 Weak transcription Brain Substantia Nigra brain
49 chr3:53856000-53858800 Strong transcription HepG2 liver
50 chr3:53856200-53859000 Weak transcription Skeletal Muscle Male skeletal muscle

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