Variant report

Variant	rs2242043
Chromosome Location	chr11:45388497-45388498
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10838458	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs11038415	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs11601710	1.00[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs12365508	0.98[ASN][1000 genomes]
rs12418562	0.94[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs1530872	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1868910	0.96[ASN][1000 genomes]
rs1989168	0.89[ASN][1000 genomes]
rs34755629	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35345891	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35864917	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6485623	0.91[ASN][1000 genomes]
rs7127704	0.87[ASN][1000 genomes]
rs7130052	0.93[CHB][hapmap];0.93[JPT][hapmap];0.98[ASN][1000 genomes]
rs7925979	0.91[ASN][1000 genomes]
rs7930779	0.91[ASN][1000 genomes]
rs7931345	0.81[ASN][1000 genomes]
rs7945142	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45386800-45391000	Weak transcription	Ovary	ovary
2	chr11:45387600-45388600	Weak transcription	Spleen	Spleen
3	chr11:45387600-45388800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:45387600-45389000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr11:45387600-45389000	Enhancers	Fetal Lung	lung
6	chr11:45387800-45388600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:45387800-45389000	Enhancers	Fetal Brain Male	brain
8	chr11:45387800-45389000	Enhancers	Fetal Stomach	stomach
9	chr11:45387800-45389400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:45387800-45389400	Enhancers	Fetal Brain Female	brain
11	chr11:45388000-45388800	Weak transcription	Lung	lung
12	chr11:45388000-45389800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:45388000-45392200	Weak transcription	Brain Angular Gyrus	brain
14	chr11:45388200-45388800	Enhancers	Brain Hippocampus Middle	brain
15	chr11:45388200-45389000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:45388200-45389400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:45388400-45388800	Enhancers	Brain Anterior Caudate	brain
18	chr11:45388400-45389000	Enhancers	Brain Cingulate Gyrus	brain
19	chr11:45388400-45389000	Enhancers	Brain Germinal Matrix	brain
20	chr11:45388400-45391000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:45388400-45392400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:45388400-45395800	Weak transcription	Liver	Liver

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