Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10838458	0.87[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs11038415	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11601710	0.93[CHB][hapmap];0.92[ASN][1000 genomes]
rs12365508	0.93[ASN][1000 genomes]
rs12418562	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs1530872	1.00[ASN][1000 genomes]
rs17788257	0.87[ASN][1000 genomes]
rs1868910	0.89[ASN][1000 genomes]
rs1989168	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1989169	0.81[AMR][1000 genomes]
rs2242043	0.93[CHB][hapmap];0.91[ASN][1000 genomes]
rs34755629	0.95[ASN][1000 genomes]
rs35345891	0.99[ASN][1000 genomes]
rs35864917	1.00[ASN][1000 genomes]
rs4755979	0.82[AMR][1000 genomes]
rs6485622	0.86[AFR][1000 genomes]
rs6485623	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7127704	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7130052	0.93[CHB][hapmap];0.91[ASN][1000 genomes]
rs7925979	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7931345	0.89[ASN][1000 genomes]
rs7945142	0.89[ASN][1000 genomes]
rs896334	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv467869	chr11:45389225-45415035	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv554185	chr11:45389225-45415035	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45393800-45406200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:45394200-45406200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:45394400-45403000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:45396600-45404400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:45397000-45402200	Weak transcription	Fetal Thymus	thymus
6	chr11:45397000-45403600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:45397400-45404600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:45397600-45403800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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