Variant report

Variant	rs2242359
Chromosome Location	chr11:10791528-10791529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10786997..10793439-chr11:10827985..10831990,10	K562	blood:
2	chr11:10790823..10792740-chr11:10794769..10796836,2	K562	blood:
3	chr11:10789750..10792470-chr11:10816043..10818592,2	K562	blood:
4	chr11:10790876..10793805-chr11:10796016..10798528,2	K562	blood:
5	chr11:10789730..10791529-chr11:10827902..10829825,2	K562	blood:

Variant related genes	Relation type
ENSG00000110321	Chromatin interaction
ENSG00000246308	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11042953	1.00[EUR][1000 genomes]
rs11042955	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12418180	0.86[CHD][hapmap];0.94[GIH][hapmap]
rs2132517	1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2270621	0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037639	chr11:10737790-10871809	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv1040606	chr11:10763753-10995698	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10773600-10795600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:10773600-10797000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:10773600-10806000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:10773800-10807400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:10774200-10802600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:10774400-10798600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr11:10774400-10798600	Strong transcription	Osteobl	bone
8	chr11:10774400-10799000	Strong transcription	HSMM	muscle
9	chr11:10774400-10799400	Strong transcription	NH-A	brain
10	chr11:10774400-10801800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:10774400-10802000	Strong transcription	Placenta	Placenta
12	chr11:10774600-10792200	Strong transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:10774600-10799200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:10774600-10802000	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr11:10774600-10802200	Strong transcription	Fetal Thymus	thymus
16	chr11:10774800-10792000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:10774800-10792200	Strong transcription	Adipose Nuclei	Adipose
18	chr11:10774800-10799000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr11:10774800-10799600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:10774800-10801800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:10774800-10801800	Strong transcription	Duodenum Mucosa	Duodenum
22	chr11:10774800-10802000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:10774800-10802000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr11:10774800-10802000	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:10774800-10802200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:10775000-10802000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:10775000-10802200	Strong transcription	Fetal Muscle Trunk	muscle
28	chr11:10775000-10802200	Strong transcription	Fetal Muscle Leg	muscle
29	chr11:10775000-10802200	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr11:10775200-10792200	Strong transcription	Liver	Liver
31	chr11:10775200-10801200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr11:10775200-10801400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr11:10775200-10802000	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr11:10775200-10802200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr11:10775400-10796400	Strong transcription	Hela-S3	cervix
36	chr11:10775400-10798400	Strong transcription	Brain Anterior Caudate	brain
37	chr11:10775400-10798400	Strong transcription	Brain Hippocampus Middle	brain
38	chr11:10775400-10801000	Strong transcription	Fetal Intestine Large	intestine
39	chr11:10775400-10802000	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr11:10775600-10801800	Strong transcription	Dnd41	blood
41	chr11:10775800-10801400	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr11:10776400-10801000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:10776400-10802000	Strong transcription	Primary T cells from cord blood	blood
44	chr11:10776400-10802000	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr11:10776600-10797000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr11:10776600-10801600	Strong transcription	A549	lung
47	chr11:10776600-10802200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr11:10777000-10800600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr11:10777000-10800800	Strong transcription	Brain Germinal Matrix	brain
50	chr11:10778200-10798200	Strong transcription	Primary T killer memory cells from peripheral blood	blood

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