Variant report

Variant	rs2270621
Chromosome Location	chr11:10777410-10777411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10772653..10774782-chr11:10774842..10778318,3	MCF-7	breast:
2	chr11:10777009..10780642-chr11:10782643..10786091,3	K562	blood:
3	chr11:10775935..10777501-chr11:10779453..10781791,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198730	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10840487	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11042953	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042954	0.95[ASN][1000 genomes]
rs11042955	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11042957	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12418180	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[ASN][1000 genomes]
rs1390576	0.95[ASN][1000 genomes]
rs1811655	0.97[ASN][1000 genomes]
rs1811656	0.97[ASN][1000 genomes]
rs2132517	0.81[CHD][hapmap];0.82[GIH][hapmap]
rs2242359	0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[EUR][1000 genomes]
rs6484483	0.95[ASN][1000 genomes]
rs6699	1.00[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1037639	chr11:10737790-10871809	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv1040606	chr11:10763753-10995698	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10773600-10778600	Weak transcription	Esophagus	oesophagus
2	chr11:10773600-10778600	Weak transcription	Gastric	stomach
3	chr11:10773600-10795600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:10773600-10797000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:10773600-10806000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:10773800-10807400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:10774000-10777600	Weak transcription	Lung	lung
8	chr11:10774000-10777600	Weak transcription	Psoas Muscle	Psoas
9	chr11:10774000-10778400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:10774000-10778600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:10774000-10778600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:10774000-10778600	Weak transcription	Aorta	Aorta
13	chr11:10774000-10778600	Weak transcription	Pancreas	Pancrea
14	chr11:10774000-10778600	Weak transcription	Right Ventricle	heart
15	chr11:10774000-10778600	Weak transcription	Spleen	Spleen
16	chr11:10774000-10778800	Weak transcription	Colonic Mucosa	Colon
17	chr11:10774000-10780800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:10774200-10778200	Weak transcription	Fetal Stomach	stomach
19	chr11:10774200-10780800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:10774200-10802600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:10774400-10778200	Weak transcription	Fetal Intestine Small	intestine
22	chr11:10774400-10778400	Weak transcription	Brain Angular Gyrus	brain
23	chr11:10774400-10778400	Weak transcription	Thymus	Thymus
24	chr11:10774400-10780000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:10774400-10782400	Weak transcription	Small Intestine	intestine
26	chr11:10774400-10782400	Strong transcription	NHDF-Ad	bronchial
27	chr11:10774400-10787400	Weak transcription	Fetal Heart	heart
28	chr11:10774400-10787600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:10774400-10787800	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr11:10774400-10787800	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr11:10774400-10787800	Weak transcription	Stomach Mucosa	stomach
32	chr11:10774400-10798600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr11:10774400-10798600	Strong transcription	Osteobl	bone
34	chr11:10774400-10799000	Strong transcription	HSMM	muscle
35	chr11:10774400-10799400	Strong transcription	NH-A	brain
36	chr11:10774400-10801800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:10774400-10802000	Strong transcription	Placenta	Placenta
38	chr11:10774600-10780000	Strong transcription	K562	blood
39	chr11:10774600-10782400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:10774600-10783000	Strong transcription	Primary B cells from peripheral blood	blood
41	chr11:10774600-10783200	Strong transcription	Primary B cells from cord blood	blood
42	chr11:10774600-10787400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:10774600-10792200	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:10774600-10799200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:10774600-10802000	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr11:10774600-10802200	Strong transcription	Fetal Thymus	thymus
47	chr11:10774800-10779800	Strong transcription	HUVEC	blood vessel
48	chr11:10774800-10782400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:10774800-10782400	Strong transcription	Fetal Lung	lung
50	chr11:10774800-10782800	Strong transcription	HUES6 Cell Line	embryonic stem cell

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