Variant report

Variant	rs6484483
Chromosome Location	chr11:10778510-10778511
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10775430..10776990-chr11:10777745..10780072,2	K562	blood:
2	chr11:10777761..10780183-chr11:10805752..10808776,3	K562	blood:
3	chr11:10777009..10780642-chr11:10782643..10786091,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10840487	0.99[ASN][1000 genomes]
rs11042953	0.99[ASN][1000 genomes]
rs11042954	1.00[ASN][1000 genomes]
rs11042955	0.99[ASN][1000 genomes]
rs11042957	0.87[ASN][1000 genomes]
rs12418180	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1390576	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1811655	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1811656	1.00[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2132517	0.93[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];0.92[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2242359	0.86[CHD][hapmap];0.83[GIH][hapmap]
rs2270621	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.95[ASN][1000 genomes]
rs4258372	0.85[CEU][hapmap]
rs6699	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1037639	chr11:10737790-10871809	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv1040606	chr11:10763753-10995698	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10773600-10778600	Weak transcription	Esophagus	oesophagus
2	chr11:10773600-10778600	Weak transcription	Gastric	stomach
3	chr11:10773600-10795600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:10773600-10797000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:10773600-10806000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:10773800-10807400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:10774000-10778600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:10774000-10778600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:10774000-10778600	Weak transcription	Aorta	Aorta
10	chr11:10774000-10778600	Weak transcription	Pancreas	Pancrea
11	chr11:10774000-10778600	Weak transcription	Right Ventricle	heart
12	chr11:10774000-10778600	Weak transcription	Spleen	Spleen
13	chr11:10774000-10778800	Weak transcription	Colonic Mucosa	Colon
14	chr11:10774000-10780800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:10774200-10780800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:10774200-10802600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:10774400-10780000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:10774400-10782400	Weak transcription	Small Intestine	intestine
19	chr11:10774400-10782400	Strong transcription	NHDF-Ad	bronchial
20	chr11:10774400-10787400	Weak transcription	Fetal Heart	heart
21	chr11:10774400-10787600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr11:10774400-10787800	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr11:10774400-10787800	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:10774400-10787800	Weak transcription	Stomach Mucosa	stomach
25	chr11:10774400-10798600	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr11:10774400-10798600	Strong transcription	Osteobl	bone
27	chr11:10774400-10799000	Strong transcription	HSMM	muscle
28	chr11:10774400-10799400	Strong transcription	NH-A	brain
29	chr11:10774400-10801800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:10774400-10802000	Strong transcription	Placenta	Placenta
31	chr11:10774600-10780000	Strong transcription	K562	blood
32	chr11:10774600-10782400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:10774600-10783000	Strong transcription	Primary B cells from peripheral blood	blood
34	chr11:10774600-10783200	Strong transcription	Primary B cells from cord blood	blood
35	chr11:10774600-10787400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:10774600-10792200	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:10774600-10799200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:10774600-10802000	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr11:10774600-10802200	Strong transcription	Fetal Thymus	thymus
40	chr11:10774800-10779800	Strong transcription	HUVEC	blood vessel
41	chr11:10774800-10782400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:10774800-10782400	Strong transcription	Fetal Lung	lung
43	chr11:10774800-10782800	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr11:10774800-10783000	Strong transcription	Primary hematopoietic stem cells	blood
45	chr11:10774800-10783200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:10774800-10789600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:10774800-10790000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:10774800-10792000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:10774800-10792200	Strong transcription	Adipose Nuclei	Adipose
50	chr11:10774800-10799000	Strong transcription	Monocytes-CD14+_RO01746	blood

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