Variant report

Variant	rs1390576
Chromosome Location	chr11:10774685-10774686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10773187..10775500-chr11:10779450..10783508,6	K562	blood:
2	chr11:10772644..10774746-chr11:10785579..10787976,2	MCF-7	breast:
3	chr11:10759605..10762542-chr11:10773214..10775037,2	MCF-7	breast:
4	chr11:10769628..10775126-chr11:10825415..10832130,14	K562	blood:
5	chr11:10770139..10775230-chr11:10827183..10832173,6	K562	blood:
6	chr11:10487786..10489702-chr11:10773796..10776018,2	K562	blood:

Variant related genes	Relation type
ENSG00000110321	Chromatin interaction
ENSG00000246308	Chromatin interaction
ENSG00000198730	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10840487	0.99[ASN][1000 genomes]
rs11042953	0.99[ASN][1000 genomes]
rs11042954	1.00[ASN][1000 genomes]
rs11042955	0.99[ASN][1000 genomes]
rs11042957	0.87[ASN][1000 genomes]
rs12418180	1.00[ASN][1000 genomes]
rs1811655	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1811656	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2132517	0.82[AFR][1000 genomes]
rs2270621	0.95[ASN][1000 genomes]
rs6484483	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1037639	chr11:10737790-10871809	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv1040606	chr11:10763753-10995698	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10772000-10774800	Active TSS	NHLF	lung
2	chr11:10773600-10778600	Weak transcription	Esophagus	oesophagus
3	chr11:10773600-10778600	Weak transcription	Gastric	stomach
4	chr11:10773600-10795600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:10773600-10797000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:10773600-10806000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:10773800-10807400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:10774000-10774800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr11:10774000-10774800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:10774000-10775000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:10774000-10775000	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:10774000-10775000	Weak transcription	Left Ventricle	heart
13	chr11:10774000-10775000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:10774000-10775600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:10774000-10775600	Weak transcription	Ovary	ovary
16	chr11:10774000-10775800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:10774000-10776400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:10774000-10776600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:10774000-10777000	Weak transcription	Brain Substantia Nigra	brain
20	chr11:10774000-10777200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:10774000-10777600	Weak transcription	Lung	lung
22	chr11:10774000-10777600	Weak transcription	Psoas Muscle	Psoas
23	chr11:10774000-10778400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:10774000-10778600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:10774000-10778600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:10774000-10778600	Weak transcription	Aorta	Aorta
27	chr11:10774000-10778600	Weak transcription	Pancreas	Pancrea
28	chr11:10774000-10778600	Weak transcription	Right Ventricle	heart
29	chr11:10774000-10778600	Weak transcription	Spleen	Spleen
30	chr11:10774000-10778800	Weak transcription	Colonic Mucosa	Colon
31	chr11:10774000-10780800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr11:10774200-10774800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:10774200-10774800	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:10774200-10774800	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr11:10774200-10775000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr11:10774200-10775000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:10774200-10776400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr11:10774200-10777000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:10774200-10778200	Weak transcription	Fetal Stomach	stomach
40	chr11:10774200-10780800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr11:10774200-10802600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:10774400-10774800	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:10774400-10774800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr11:10774400-10774800	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr11:10774400-10774800	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr11:10774400-10774800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr11:10774400-10774800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:10774400-10774800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:10774400-10774800	Weak transcription	Adipose Nuclei	Adipose
50	chr11:10774400-10774800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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