Variant report

Variant	rs10840487
Chromosome Location	chr11:10775661-10775662
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10775430..10776990-chr11:10777745..10780072,2	K562	blood:
2	chr11:10772653..10774782-chr11:10774842..10778318,3	MCF-7	breast:
3	chr11:10487786..10489702-chr11:10773796..10776018,2	K562	blood:

Variant related genes	Relation type
ENSG00000198730	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11042953	1.00[ASN][1000 genomes]
rs11042954	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11042955	0.98[ASN][1000 genomes]
rs11042957	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12418180	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1390576	0.99[ASN][1000 genomes]
rs1811655	0.90[ASN][1000 genomes]
rs1811656	0.90[ASN][1000 genomes]
rs2270621	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6484483	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1037639	chr11:10737790-10871809	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv1040606	chr11:10763753-10995698	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10773600-10778600	Weak transcription	Esophagus	oesophagus
2	chr11:10773600-10778600	Weak transcription	Gastric	stomach
3	chr11:10773600-10795600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:10773600-10797000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:10773600-10806000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:10773800-10807400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:10774000-10775800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:10774000-10776400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:10774000-10776600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:10774000-10777000	Weak transcription	Brain Substantia Nigra	brain
11	chr11:10774000-10777200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:10774000-10777600	Weak transcription	Lung	lung
13	chr11:10774000-10777600	Weak transcription	Psoas Muscle	Psoas
14	chr11:10774000-10778400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:10774000-10778600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:10774000-10778600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:10774000-10778600	Weak transcription	Aorta	Aorta
18	chr11:10774000-10778600	Weak transcription	Pancreas	Pancrea
19	chr11:10774000-10778600	Weak transcription	Right Ventricle	heart
20	chr11:10774000-10778600	Weak transcription	Spleen	Spleen
21	chr11:10774000-10778800	Weak transcription	Colonic Mucosa	Colon
22	chr11:10774000-10780800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr11:10774200-10776400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:10774200-10777000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:10774200-10778200	Weak transcription	Fetal Stomach	stomach
26	chr11:10774200-10780800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:10774200-10802600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:10774400-10776200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr11:10774400-10776400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
30	chr11:10774400-10776400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr11:10774400-10776400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:10774400-10776600	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:10774400-10776600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:10774400-10776600	Weak transcription	A549	lung
35	chr11:10774400-10777000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:10774400-10777000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr11:10774400-10777000	Weak transcription	Fetal Brain Male	brain
38	chr11:10774400-10777000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr11:10774400-10777000	Weak transcription	HSMMtube	muscle
40	chr11:10774400-10778200	Weak transcription	Fetal Intestine Small	intestine
41	chr11:10774400-10778400	Weak transcription	Brain Angular Gyrus	brain
42	chr11:10774400-10778400	Weak transcription	Thymus	Thymus
43	chr11:10774400-10780000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:10774400-10782400	Weak transcription	Small Intestine	intestine
45	chr11:10774400-10782400	Strong transcription	NHDF-Ad	bronchial
46	chr11:10774400-10787400	Weak transcription	Fetal Heart	heart
47	chr11:10774400-10787600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr11:10774400-10787800	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr11:10774400-10787800	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr11:10774400-10787800	Weak transcription	Stomach Mucosa	stomach

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