Variant report

Variant	rs6699
Chromosome Location	chr11:10801186-10801187
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:10795839..10802192-chr11:10802930..10808147,6	K562	blood:
2	chr11:10798790..10803565-chr11:10826335..10831643,4	MCF-7	breast:
3	chr11:10799470..10802249-chr11:10803306..10806049,3	MCF-7	breast:
4	chr11:10796936..10798935-chr11:10800844..10802618,2	K562	blood:
5	chr11:10799715..10802959-chr11:10814145..10817892,5	K562	blood:
6	chr11:10787833..10789582-chr11:10800601..10803058,2	K562	blood:
7	chr11:10800792..10802867-chr11:10806176..10808886,2	MCF-7	breast:
8	chr11:10800784..10803670-chr11:10820298..10822214,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000110321	Chromatin interaction
ENSG00000246308	Chromatin interaction
ENSG00000255125	Chromatin interaction
ENSG00000198730	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11042955	0.81[ASN][1000 genomes]
rs11042957	0.92[ASN][1000 genomes]
rs11042958	0.98[EUR][1000 genomes]
rs11042959	0.98[EUR][1000 genomes]
rs12418180	1.00[CHB][hapmap]
rs1811655	0.88[ASN][1000 genomes]
rs1811656	0.88[ASN][1000 genomes]
rs2270621	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7124986	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037639	chr11:10737790-10871809	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv1040606	chr11:10763753-10995698	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10773600-10806000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:10773800-10807400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:10774200-10802600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr11:10774400-10801800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:10774400-10802000	Strong transcription	Placenta	Placenta
6	chr11:10774600-10802000	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr11:10774600-10802200	Strong transcription	Fetal Thymus	thymus
8	chr11:10774800-10801800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:10774800-10801800	Strong transcription	Duodenum Mucosa	Duodenum
10	chr11:10774800-10802000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:10774800-10802000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:10774800-10802000	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:10774800-10802200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:10775000-10802000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:10775000-10802200	Strong transcription	Fetal Muscle Trunk	muscle
16	chr11:10775000-10802200	Strong transcription	Fetal Muscle Leg	muscle
17	chr11:10775000-10802200	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr11:10775200-10801200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr11:10775200-10801400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:10775200-10802000	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr11:10775200-10802200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:10775400-10802000	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr11:10775600-10801800	Strong transcription	Dnd41	blood
24	chr11:10775800-10801400	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr11:10776400-10802000	Strong transcription	Primary T cells from cord blood	blood
26	chr11:10776400-10802000	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:10776600-10801600	Strong transcription	A549	lung
28	chr11:10776600-10802200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr11:10780800-10801800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:10783800-10802600	Strong transcription	Fetal Lung	lung
31	chr11:10784600-10801200	Strong transcription	Primary B cells from peripheral blood	blood
32	chr11:10785200-10802200	Strong transcription	Stomach Smooth Muscle	stomach
33	chr11:10785400-10801200	Strong transcription	GM12878-XiMat	blood
34	chr11:10785400-10801200	Strong transcription	NHEK	skin
35	chr11:10786000-10801200	Strong transcription	HUVEC	blood vessel
36	chr11:10788600-10801200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr11:10788600-10801400	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr11:10788600-10801600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr11:10788800-10801800	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr11:10789400-10802200	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr11:10792200-10802200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:10793200-10801200	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr11:10793200-10802200	Strong transcription	Fetal Stomach	stomach
44	chr11:10793800-10802200	Strong transcription	Aorta	Aorta
45	chr11:10796600-10817800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr11:10796800-10806000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr11:10797000-10806000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr11:10797000-10806200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr11:10797200-10817800	Weak transcription	Psoas Muscle	Psoas
50	chr11:10797400-10817800	Weak transcription	Fetal Kidney	kidney

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