Variant report

Variant	rs7124986
Chromosome Location	chr11:10803380-10803381
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10798790..10803565-chr11:10826335..10831643,4	MCF-7	breast:
2	chr11:10800784..10803670-chr11:10820298..10822214,2	K562	blood:

Variant related genes	Relation type
ENSG00000110321	Chromatin interaction
ENSG00000246308	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11042958	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11042959	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6699	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037639	chr11:10737790-10871809	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv1040606	chr11:10763753-10995698	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10773600-10806000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:10773800-10807400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:10796600-10817800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:10796800-10806000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:10797000-10806000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:10797000-10806200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:10797200-10817800	Weak transcription	Psoas Muscle	Psoas
8	chr11:10797400-10817800	Weak transcription	Fetal Kidney	kidney
9	chr11:10798200-10804400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr11:10798200-10817400	Weak transcription	Small Intestine	intestine
11	chr11:10799600-10803800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:10799800-10803400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:10799800-10806200	Weak transcription	Fetal Brain Male	brain
14	chr11:10799800-10814000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:10800000-10803400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:10800200-10806000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:10800400-10803800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:10800400-10805200	Weak transcription	Fetal Heart	heart
19	chr11:10800600-10804600	Weak transcription	Thymus	Thymus
20	chr11:10800600-10805000	Weak transcription	Left Ventricle	heart
21	chr11:10800600-10805600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:10800600-10805600	Weak transcription	Right Atrium	heart
23	chr11:10800600-10805600	Weak transcription	Right Ventricle	heart
24	chr11:10800600-10805800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:10800600-10805800	Weak transcription	Brain Angular Gyrus	brain
26	chr11:10800600-10805800	Weak transcription	Brain Anterior Caudate	brain
27	chr11:10800600-10805800	Weak transcription	Brain Substantia Nigra	brain
28	chr11:10800600-10806000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:10800600-10806000	Weak transcription	Fetal Brain Female	brain
30	chr11:10800600-10806000	Weak transcription	HMEC	breast
31	chr11:10800600-10806000	Weak transcription	HSMMtube	muscle
32	chr11:10800600-10806000	Weak transcription	K562	blood
33	chr11:10800600-10813800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr11:10800600-10814200	Weak transcription	Ovary	ovary
35	chr11:10800600-10814200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr11:10800600-10814200	Weak transcription	Hela-S3	cervix
37	chr11:10800600-10817800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr11:10800600-10822000	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr11:10800800-10805800	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:10800800-10805800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:10800800-10806200	Weak transcription	Brain Germinal Matrix	brain
42	chr11:10801000-10803800	Weak transcription	Osteobl	bone
43	chr11:10801000-10805200	Weak transcription	HepG2	liver
44	chr11:10801000-10805400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr11:10801000-10805400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr11:10801000-10805400	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr11:10801000-10805600	Weak transcription	Brain Hippocampus Middle	brain
48	chr11:10801000-10806000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:10801000-10817400	Weak transcription	Fetal Intestine Large	intestine
50	chr11:10801200-10803400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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