Variant report

Variant	rs2242831
Chromosome Location	chr21:16819172-16819173
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16980762	1.00[AMR][1000 genomes]
rs2142447	1.00[AMR][1000 genomes]
rs2242832	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv834049	chr21:16717421-16905300	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16813200-16819200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr21:16813200-16819200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr21:16814600-16819400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr21:16817200-16819200	Enhancers	Primary hematopoietic stem cells	blood
5	chr21:16817400-16819200	Enhancers	HepG2	liver
6	chr21:16817800-16819200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr21:16818400-16819200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr21:16818600-16822600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr21:16818800-16819400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr21:16819000-16819200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr21:16819000-16819200	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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