Variant report

Variant	rs2242832
Chromosome Location	chr21:16834436-16834437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2142447	1.00[AMR][1000 genomes]
rs2242831	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv834049	chr21:16717421-16905300	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16833600-16834800	Enhancers	HepG2	liver
2	chr21:16834000-16834600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr21:16834000-16834600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr21:16834000-16834600	Weak transcription	Gastric	stomach
5	chr21:16834000-16834800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr21:16834200-16834800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr21:16834200-16834800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr21:16834200-16834800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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