Variant report

Variant	rs2246142
Chromosome Location	chr2:145784885-145784886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:145774729..145777688-chr2:145783583..145786278,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12993495	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12996204	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1347828	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1406225	0.83[AFR][1000 genomes]
rs1528412	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1528413	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16855349	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1881411	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1898731	0.89[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2243647	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2243648	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2246114	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2246245	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2249681	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2249798	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2249819	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2250164	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2250518	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2250546	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2256460	0.82[AFR][1000 genomes]
rs2579024	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs718229	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7589308	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv932113	chr2:145515124-145844491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834398	chr2:145659419-145830156	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv431768	chr2:145741527-145981491	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145780600-145787400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:145781000-145785600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr2:145781200-145785800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:145781400-145785000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:145783000-145787400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:145783200-145786800	Weak transcription	Brain Anterior Caudate	brain
7	chr2:145783200-145787200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:145783400-145787200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr2:145783800-145786600	Weak transcription	Brain Hippocampus Middle	brain
10	chr2:145783800-145787200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr2:145784000-145785400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:145784000-145786200	Enhancers	Fetal Heart	heart
13	chr2:145784200-145785000	Enhancers	Ovary	ovary
14	chr2:145784200-145785200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:145784200-145785200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr2:145784200-145785600	Enhancers	Fetal Lung	lung
17	chr2:145784200-145785600	Enhancers	NHLF	lung
18	chr2:145784400-145785200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:145784400-145787600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:145784400-145787800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr2:145784600-145785000	Enhancers	Placenta Amnion	Placenta Amnion
22	chr2:145784600-145785000	Active TSS	A549	lung
23	chr2:145784800-145785400	Weak transcription	NHDF-Ad	bronchial
24	chr2:145784800-145785600	Weak transcription	HSMMtube	muscle
25	chr2:145784800-145785800	Enhancers	Osteobl	bone

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