Variant report

Variant	rs718229
Chromosome Location	chr2:145768375-145768376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZEB2-17	chr2:145768315-145768444	NONHSAT074814

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12993495	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12996204	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1347828	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1528412	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1528413	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1550323	0.80[AFR][1000 genomes]
rs16855349	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1881411	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1898731	0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2243647	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2243648	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2246114	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2246142	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2246245	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2249681	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2249798	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2249819	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2250164	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250518	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2250546	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2579024	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7589308	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv932113	chr2:145515124-145844491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834398	chr2:145659419-145830156	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv431768	chr2:145741527-145981491	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145765200-145770200	Weak transcription	Hela-S3	cervix
2	chr2:145765600-145769200	Weak transcription	Right Atrium	heart
3	chr2:145765600-145769400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:145765600-145769800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr2:145765600-145770000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:145765600-145770400	Weak transcription	Aorta	Aorta
7	chr2:145765800-145769200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:145765800-145769800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:145765800-145769800	Weak transcription	Fetal Lung	lung
10	chr2:145765800-145769800	Weak transcription	HSMMtube	muscle
11	chr2:145766000-145769600	Weak transcription	HSMM	muscle
12	chr2:145766000-145769800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:145766000-145769800	Weak transcription	NH-A	brain
14	chr2:145766000-145769800	Weak transcription	Osteobl	bone
15	chr2:145766000-145770000	Weak transcription	HMEC	breast
16	chr2:145766200-145769000	Weak transcription	HUVEC	blood vessel
17	chr2:145766200-145769400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr2:145766200-145770000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:145766200-145770000	Weak transcription	NHDF-Ad	bronchial
20	chr2:145768000-145768400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr2:145768000-145772000	Enhancers	Fetal Heart	heart
22	chr2:145768200-145768400	Enhancers	A549	lung

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