Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:120101055..120116563-chr11:120160593..120179156,52	K562	blood:
2	chr11:120111222..120113154-chr11:120128592..120130536,2	K562	blood:
3	chr11:120080610..120089931-chr11:120105398..120112199,18	K562	blood:
4	chr11:120104320..120113596-chr11:120167938..120177639,38	MCF-7	breast:
5	chr11:120111344..120113154-chr11:120129036..120131490,2	K562	blood:
6	chr11:120111308..120114298-chr11:120159420..120161077,2	MCF-7	breast:
7	chr11:120111693..120114585-chr11:120155951..120157508,2	K562	blood:
8	chr11:120104420..120112680-chr11:120168705..120181524,41	K562	blood:

No data

Variant related genes	Relation type
ENSG00000184232	Chromatin interaction
ENSG00000137709	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10892553	0.94[ASN][1000 genomes]
rs1287393	0.97[EUR][1000 genomes]
rs1287395	0.92[EUR][1000 genomes]
rs2444241	0.92[EUR][1000 genomes]
rs2444242	0.92[EUR][1000 genomes]
rs2444243	0.92[EUR][1000 genomes]
rs2508495	0.92[EUR][1000 genomes]
rs2508496	0.89[EUR][1000 genomes]
rs2509623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2715890	0.95[ASN][1000 genomes]
rs2845702	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2845708	0.95[EUR][1000 genomes]
rs2847499	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs476809	0.92[EUR][1000 genomes]
rs477863	0.92[EUR][1000 genomes]
rs489454	0.92[EUR][1000 genomes]
rs492275	0.92[EUR][1000 genomes]
rs513944	0.95[EUR][1000 genomes]
rs521841	0.92[EUR][1000 genomes]
rs537907	0.92[EUR][1000 genomes]
rs540857	0.92[EUR][1000 genomes]
rs547990	0.92[EUR][1000 genomes]
rs896695	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120110400-120112000	Enhancers	Pancreas	Pancrea
2	chr11:120111200-120112000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
3	chr11:120111200-120112000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:120111200-120112000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:120111200-120112000	Bivalent Enhancer	Fetal Intestine Large	intestine
6	chr11:120111600-120112400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
7	chr11:120111600-120112600	Enhancers	Esophagus	oesophagus
8	chr11:120111600-120112600	Enhancers	Lung	lung
9	chr11:120111800-120112400	Bivalent Enhancer	Fetal Brain Male	brain
10	chr11:120111800-120113800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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