Variant report

Variant	rs2715890
Chromosome Location	chr11:120110219-120110220
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:120109934-120110354	K562	blood:	n/a	n/a
2	TAF7	chr11:120110145-120110735	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTBP2	chr11:120110209-120111217	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr11:120110194-120110646	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120101055..120116563-chr11:120160593..120179156,52	K562	blood:
2	chr11:120107374..120110396-chr11:120138871..120141159,3	K562	blood:
3	chr11:120080610..120089931-chr11:120105398..120112199,18	K562	blood:
4	chr11:120042899..120045222-chr11:120108366..120110220,2	MCF-7	breast:
5	chr11:120109877..120110557-chr11:120173590..120174191,2	K562	blood:
6	chr11:120104352..120110604-chr11:120164438..120175098,43	MCF-7	breast:
7	chr11:120107661..120110242-chr11:120155519..120159071,3	K562	blood:
8	chr11:120104320..120113596-chr11:120167938..120177639,38	MCF-7	breast:
9	chr11:120107465..120110396-chr11:120139257..120141159,2	K562	blood:
10	chr11:120104420..120112680-chr11:120168705..120181524,41	K562	blood:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10892553	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2253006	0.95[ASN][1000 genomes]
rs2509623	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2845702	0.92[ASN][1000 genomes]
rs2845708	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120096600-120110800	Weak transcription	Right Atrium	heart
2	chr11:120099800-120110800	Weak transcription	Ovary	ovary
3	chr11:120101600-120111000	Weak transcription	Liver	Liver
4	chr11:120106200-120110400	Weak transcription	Pancreas	Pancrea
5	chr11:120106800-120110400	Weak transcription	Esophagus	oesophagus
6	chr11:120109800-120110400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:120110000-120110400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:120110000-120111200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr11:120110200-120110400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
10	chr11:120110200-120110600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
11	chr11:120110200-120110600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
12	chr11:120110200-120110600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
13	chr11:120110200-120110600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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