Variant report

Variant	rs2256647
Chromosome Location	chr8:11491263-11491264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17153559	0.97[ASN][1000 genomes]
rs2256785	0.85[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2256885	0.88[ASN][1000 genomes]
rs2263513	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1017865	chr8:11377795-11579954	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1018978	chr8:11438267-11858466	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv1807593	chr8:11487630-11495441	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv436583	chr8:11489854-11495692	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11485000-11491400	Enhancers	Fetal Intestine Small	intestine
2	chr8:11485600-11491400	Enhancers	Ovary	ovary
3	chr8:11488600-11492200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:11489800-11491800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:11490000-11494000	Weak transcription	Fetal Intestine Large	intestine
6	chr8:11490400-11491400	Enhancers	Gastric	stomach
7	chr8:11490600-11492200	Weak transcription	Spleen	Spleen
8	chr8:11490800-11499200	Weak transcription	Left Ventricle	heart
9	chr8:11491000-11492000	Enhancers	HepG2	liver
10	chr8:11491000-11492400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:11491000-11494400	Weak transcription	Stomach Mucosa	stomach
12	chr8:11491000-11498400	Weak transcription	Pancreas	Pancrea
13	chr8:11491000-11499600	Weak transcription	Right Ventricle	heart
14	chr8:11491200-11494200	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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