Variant report

Variant	rs2256885
Chromosome Location	chr8:11489579-11489580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:11489168..11492004-chr8:11494231..11496266,2	K562	blood:
2	chr8:11488454..11489748-chr8:11587903..11588890,8	MCF-7	breast:
3	chr8:11488454..11489748-chr8:11587903..11588890,4	MCF-7	breast:
4	chr8:11432287..11434646-chr8:11489007..11491911,2	K562	blood:

Variant related genes	Relation type
ENSG00000170983	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17153559	0.88[ASN][1000 genomes]
rs2256647	0.88[ASN][1000 genomes]
rs2256785	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1017865	chr8:11377795-11579954	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1018978	chr8:11438267-11858466	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv1807593	chr8:11487630-11495441	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11482200-11491000	Enhancers	Pancreas	Pancrea
2	chr8:11485000-11491400	Enhancers	Fetal Intestine Small	intestine
3	chr8:11485200-11490800	Enhancers	Liver	Liver
4	chr8:11485200-11491000	Enhancers	Stomach Mucosa	stomach
5	chr8:11485600-11491400	Enhancers	Ovary	ovary
6	chr8:11487600-11491000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr8:11488200-11489800	Enhancers	Duodenum Mucosa	Duodenum
8	chr8:11488200-11490000	Enhancers	Gastric	stomach
9	chr8:11488400-11489600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr8:11488400-11489800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:11488400-11490600	Enhancers	Spleen	Spleen
12	chr8:11488400-11490800	Enhancers	Left Ventricle	heart
13	chr8:11488400-11491000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr8:11488400-11491000	Enhancers	Fetal Kidney	kidney
15	chr8:11488600-11489600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:11488600-11489600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr8:11488600-11489600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr8:11488600-11489600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr8:11488600-11489600	Flanking Active TSS	HepG2	liver
20	chr8:11488600-11489800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr8:11488600-11490000	Enhancers	Right Atrium	heart
22	chr8:11488600-11490000	Enhancers	Right Ventricle	heart
23	chr8:11488600-11490800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr8:11488600-11492200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:11488800-11489600	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr8:11488800-11489800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr8:11488800-11489800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr8:11488800-11489800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr8:11488800-11489800	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr8:11488800-11490000	Enhancers	Fetal Intestine Large	intestine
31	chr8:11488800-11490000	Enhancers	Fetal Thymus	thymus
32	chr8:11488800-11490200	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr8:11488800-11490400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr8:11489000-11489600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr8:11489000-11489600	Enhancers	Fetal Heart	heart
36	chr8:11489000-11489800	Enhancers	Colon Smooth Muscle	Colon
37	chr8:11489000-11490200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr8:11489200-11489600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
39	chr8:11489200-11489800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr8:11489200-11489800	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr8:11489200-11489800	Enhancers	Stomach Smooth Muscle	stomach
42	chr8:11489200-11490000	Enhancers	Placenta	Placenta
43	chr8:11489400-11489600	Bivalent Enhancer	Fetal Stomach	stomach
44	chr8:11489400-11489800	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
45	chr8:11489400-11489800	Bivalent Enhancer	Fetal Lung	lung

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