Variant report

Variant	rs2257058
Chromosome Location	chr15:34319425-34319426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10775220	1.00[AMR][1000 genomes]
rs11630826	1.00[YRI][hapmap]
rs12917199	1.00[AMR][1000 genomes]
rs1865924	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2243764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2632074	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2632089	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2684929	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2684938	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2684942	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2684948	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2684949	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2684957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2702275	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2705351	1.00[AMR][1000 genomes]
rs2879445	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4411478	0.83[AFR][1000 genomes]
rs4780200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4780201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4780202	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs486970	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs499142	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs527470	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs537920	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs542890	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs545484	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs547824	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs572179	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs591999	1.00[AMR][1000 genomes]
rs612992	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs643827	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6495507	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6495516	1.00[AMR][1000 genomes]
rs681873	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs682484	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs683417	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7162728	1.00[AMR][1000 genomes]
rs7494971	1.00[AMR][1000 genomes]
rs8027337	1.00[AMR][1000 genomes]
rs8030334	1.00[YRI][hapmap]
rs8041507	1.00[AMR][1000 genomes]
rs8041929	1.00[AMR][1000 genomes]
rs889871	1.00[AMR][1000 genomes]
rs891342	1.00[AMR][1000 genomes]
rs919470	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv903985	chr15:34279319-34370487	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34304200-34319800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr15:34309400-34330000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:34309600-34330000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:34314200-34326400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:34316600-34329400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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