Variant report

Variant	rs2632089
Chromosome Location	chr15:34328484-34328485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:34325247..34329253-chr15:34329844..34332256,3	MCF-7	breast:
2	chr15:34299066..34301596-chr15:34326883..34329699,2	MCF-7	breast:
3	chr15:34314027..34315859-chr15:34326232..34328519,2	MCF-7	breast:
4	chr15:34327076..34328752-chr15:34329743..34331266,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169857	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10775220	1.00[AMR][1000 genomes]
rs12917199	1.00[AMR][1000 genomes]
rs1865924	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2243764	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2257058	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2632074	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2684929	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2684938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2684942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2684948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2684949	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2684957	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2702275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2705351	1.00[AMR][1000 genomes]
rs2879445	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4411478	0.87[AFR][1000 genomes]
rs4780200	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4780201	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4780202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs486970	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs499142	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs527470	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs537920	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs542890	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs545484	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs547824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs572179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs591999	1.00[AMR][1000 genomes]
rs612992	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs643827	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6495507	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6495516	1.00[AMR][1000 genomes]
rs681873	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs682484	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs683417	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7162728	1.00[AMR][1000 genomes]
rs7494971	1.00[AMR][1000 genomes]
rs8027337	1.00[AMR][1000 genomes]
rs8041507	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8041929	1.00[AMR][1000 genomes]
rs889871	1.00[AMR][1000 genomes]
rs891342	1.00[AMR][1000 genomes]
rs919470	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv903985	chr15:34279319-34370487	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34309400-34330000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:34309600-34330000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr15:34316600-34329400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:34320200-34329800	Weak transcription	Hela-S3	cervix
5	chr15:34323000-34330000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:34324800-34329800	Weak transcription	Brain Angular Gyrus	brain
7	chr15:34325200-34329400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr15:34326600-34330200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:34327000-34330000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:34327200-34329800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:34327200-34330000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:34327400-34330000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:34327400-34330000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:34327400-34330000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr15:34327600-34329800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr15:34327600-34330000	Weak transcription	Fetal Heart	heart
17	chr15:34327600-34330000	Weak transcription	Fetal Kidney	kidney
18	chr15:34327800-34329400	Weak transcription	GM12878-XiMat	blood
19	chr15:34327800-34330000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:34327800-34330000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr15:34327800-34330000	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:34327800-34330000	Weak transcription	Fetal Brain Male	brain
23	chr15:34328000-34330000	Weak transcription	Fetal Lung	lung
24	chr15:34328200-34329400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:34328200-34329800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr15:34328200-34329800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:34328200-34330000	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr15:34328200-34330000	Weak transcription	Fetal Stomach	stomach
29	chr15:34328400-34330000	Weak transcription	NHDF-Ad	bronchial
30	chr15:34328400-34330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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