Variant report

Variant	rs225711
Chromosome Location	chr6:142541994-142541995
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11155234	1.00[JPT][hapmap]
rs1342059	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1475770	1.00[ASN][1000 genomes]
rs225625	1.00[JPT][hapmap]
rs225626	1.00[JPT][hapmap]
rs225627	1.00[JPT][hapmap]
rs225638	1.00[JPT][hapmap]
rs225647	1.00[JPT][hapmap]
rs225649	1.00[JPT][hapmap]
rs225694	1.00[JPT][hapmap]
rs72983867	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72983869	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72986537	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830824	chr6:142361107-142544929	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142489000-142543200	Weak transcription	Small Intestine	intestine
2	chr6:142496600-142546800	Weak transcription	NHLF	lung
3	chr6:142521600-142542600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:142523000-142543000	Weak transcription	Stomach Mucosa	stomach
5	chr6:142532400-142543000	Weak transcription	Fetal Brain Male	brain
6	chr6:142533200-142543200	Weak transcription	HMEC	breast
7	chr6:142534800-142543400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:142535000-142542000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:142535000-142542200	Weak transcription	Lung	lung
10	chr6:142535000-142542600	Weak transcription	Gastric	stomach
11	chr6:142535000-142543200	Weak transcription	NHEK	skin
12	chr6:142535000-142544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:142535000-142544800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:142535000-142545000	Weak transcription	Esophagus	oesophagus
15	chr6:142535000-142545600	Weak transcription	Aorta	Aorta
16	chr6:142535000-142548800	Weak transcription	NH-A	brain
17	chr6:142535200-142542000	Weak transcription	Hela-S3	cervix
18	chr6:142535200-142542400	Weak transcription	Ovary	ovary
19	chr6:142535200-142543400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:142535200-142544200	Weak transcription	Fetal Intestine Small	intestine
21	chr6:142535200-142545600	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:142535200-142546000	Weak transcription	Fetal Stomach	stomach
23	chr6:142535200-142548800	Weak transcription	Left Ventricle	heart
24	chr6:142535200-142552800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:142535400-142546800	Weak transcription	Fetal Intestine Large	intestine
26	chr6:142535600-142546200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr6:142535800-142542600	Weak transcription	HSMMtube	muscle
28	chr6:142535800-142543000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr6:142535800-142543400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:142535800-142553400	Weak transcription	Thymus	Thymus
31	chr6:142536000-142543800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr6:142536000-142544000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr6:142536000-142552800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr6:142536400-142543800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:142536400-142546600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:142537000-142543600	Weak transcription	Colon Smooth Muscle	Colon
37	chr6:142537600-142542400	Strong transcription	Primary B cells from cord blood	blood
38	chr6:142539200-142542000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:142539200-142542400	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr6:142539600-142542400	Strong transcription	Primary T cells from cord blood	blood
41	chr6:142539600-142542400	Strong transcription	Fetal Thymus	thymus
42	chr6:142539800-142542400	Weak transcription	Brain Hippocampus Middle	brain
43	chr6:142539800-142543200	Weak transcription	Brain Anterior Caudate	brain
44	chr6:142539800-142543600	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr6:142539800-142546400	Weak transcription	Fetal Lung	lung
46	chr6:142540000-142542800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:142540000-142542800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:142540000-142543400	Weak transcription	Primary hematopoietic stem cells	blood
49	chr6:142540000-142544800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr6:142540000-142544800	Weak transcription	GM12878-XiMat	blood

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