Variant report

Variant	rs72986537
Chromosome Location	chr6:142624329-142624330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:142624264..142626987-chr6:142649609..142652476,2	MCF-7	breast:
2	chr6:142624220..142625771-chr6:142695392..142697022,2	MCF-7	breast:
3	chr6:142624206..142626464-chr6:143264928..143267518,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000010818	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1342059	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1475770	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs225711	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1029666	chr6:142594099-142643084	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv275340	chr6:142620405-142624568	Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142621800-142625600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:142622000-142624600	Active TSS	Rectal Smooth Muscle	rectum
3	chr6:142622200-142624600	Active TSS	Esophagus	oesophagus
4	chr6:142622200-142624600	Active TSS	Placenta Amnion	Placenta Amnion
5	chr6:142622200-142624800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
6	chr6:142622200-142625000	Bivalent/Poised TSS	HepG2	liver
7	chr6:142622200-142626400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:142622200-142626800	Active TSS	A549	lung
9	chr6:142622400-142624400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr6:142622400-142624400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr6:142622400-142624400	Bivalent/Poised TSS	Fetal Stomach	stomach
12	chr6:142622400-142624400	Active TSS	Right Atrium	heart
13	chr6:142622400-142624600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
14	chr6:142622400-142624600	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr6:142622400-142624600	Active TSS	Stomach Mucosa	stomach
16	chr6:142622400-142624800	Active TSS	Hela-S3	cervix
17	chr6:142622400-142625400	Active TSS	NHEK	skin
18	chr6:142622400-142625600	Active TSS	Duodenum Mucosa	Duodenum
19	chr6:142622400-142625800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:142622400-142626200	Active TSS	Fetal Lung	lung
21	chr6:142622400-142627600	Active TSS	NHLF	lung
22	chr6:142622600-142624400	Active TSS	HSMM	muscle
23	chr6:142622600-142624600	Active TSS	Lung	lung
24	chr6:142622600-142624800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:142622600-142625600	Active TSS	Placenta	Placenta
26	chr6:142622600-142625800	Active TSS	Fetal Brain Female	brain
27	chr6:142623000-142624800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:142623000-142626200	Active TSS	Liver	Liver
29	chr6:142623600-142624600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:142623600-142624800	ZNF genes & repeats	Fetal Brain Male	brain
31	chr6:142623800-142624400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:142623800-142624600	Enhancers	Primary hematopoietic stem cells	blood
33	chr6:142623800-142624600	Active TSS	Fetal Intestine Small	intestine
34	chr6:142623800-142624600	Flanking Active TSS	HMEC	breast
35	chr6:142623800-142626000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr6:142623800-142626200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:142624000-142624600	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr6:142624000-142625200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:142624000-142625200	Active TSS	Stomach Smooth Muscle	stomach
40	chr6:142624200-142624400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
41	chr6:142624200-142624400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:142624200-142624400	Active TSS	HUVEC	blood vessel
43	chr6:142624200-142624600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:142624200-142624600	Active TSS	Fetal Muscle Leg	muscle
45	chr6:142624200-142624800	Active TSS	Fetal Intestine Large	intestine

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