Variant report

Variant	rs2268166
Chromosome Location	chr11:4126009-4126010
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:4124837..4126563-chr11:4128507..4131052,2	MCF-7	breast:
2	chr11:4117926..4120153-chr11:4124381..4126290,2	K562	blood:
3	chr11:4115769..4117950-chr11:4125666..4127291,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167325	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10498198	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11031003	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11031065	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11031082	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11031136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12271818	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12273142	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12273534	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12273972	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12274313	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12288551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12288914	0.92[EUR][1000 genomes]
rs12295358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2268167	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55666376	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58517549	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7130539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74051925	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74054319	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896896	chr11:4010409-4185595	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv2758253	chr11:4055945-4510188	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	esv2759797	chr11:4055945-4510188	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv428248	chr11:4055945-4510188	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv832053	chr11:4096527-4330263	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv1053189	chr11:4123119-4359044	Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4117000-4137200	Weak transcription	Esophagus	oesophagus
2	chr11:4117000-4141000	Weak transcription	Ovary	ovary
3	chr11:4117200-4126800	Weak transcription	Psoas Muscle	Psoas
4	chr11:4117200-4127400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:4117200-4142200	Weak transcription	Colonic Mucosa	Colon
6	chr11:4117400-4141800	Weak transcription	Small Intestine	intestine
7	chr11:4117600-4126400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:4117600-4126400	Weak transcription	Fetal Intestine Large	intestine
9	chr11:4117600-4126600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:4117600-4126600	Weak transcription	Spleen	Spleen
11	chr11:4117600-4127000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:4117600-4127000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:4117600-4127200	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:4117600-4127200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:4117600-4128600	Weak transcription	Brain Substantia Nigra	brain
16	chr11:4117600-4129200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:4117600-4129800	Weak transcription	Fetal Heart	heart
18	chr11:4117600-4133000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:4117600-4137400	Weak transcription	Right Ventricle	heart
20	chr11:4117600-4144600	Weak transcription	HSMMtube	muscle
21	chr11:4117600-4145200	Weak transcription	Gastric	stomach
22	chr11:4117600-4153000	Weak transcription	Stomach Mucosa	stomach
23	chr11:4117800-4126400	Weak transcription	Brain Angular Gyrus	brain
24	chr11:4117800-4126400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:4117800-4126800	Weak transcription	NHLF	lung
26	chr11:4117800-4127000	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:4117800-4147800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:4117800-4160200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr11:4118000-4159200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:4118400-4126200	Weak transcription	Fetal Lung	lung
31	chr11:4118400-4127000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:4118400-4146400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:4118400-4156200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:4118800-4126600	Weak transcription	NHEK	skin
35	chr11:4118800-4141000	Weak transcription	Brain Germinal Matrix	brain
36	chr11:4119000-4126400	Weak transcription	Thymus	Thymus
37	chr11:4119000-4127000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr11:4119000-4127200	Weak transcription	Fetal Kidney	kidney
39	chr11:4119000-4137800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:4119400-4157600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:4121000-4159400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr11:4121200-4128400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr11:4121400-4127000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr11:4121400-4127200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr11:4121400-4129200	Strong transcription	K562	blood
46	chr11:4121600-4142800	Weak transcription	Fetal Brain Male	brain
47	chr11:4121800-4126400	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr11:4122000-4139800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:4122400-4127000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr11:4122400-4158000	Strong transcription	Dnd41	blood

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