Variant report

Variant	rs2270329
Chromosome Location	chr2:36596346-36596347
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36582124..36584781-chr2:36595194..36598033,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VIT-4	chr2:36596258-36596392	NONHSAT070080

Variant related genes	Relation type
ENSG00000150938	Chromatin interaction
ENSG00000260025	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12623633	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs13389698	0.87[ASN][1000 genomes]
rs13399173	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13419520	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17018693	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs3755210	1.00[JPT][hapmap]
rs3755215	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3770944	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3770950	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3770953	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3821161	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4670544	0.83[ASN][1000 genomes]
rs6726672	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36585200-36596400	Weak transcription	Pancreas	Pancrea
2	chr2:36585800-36596400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:36586200-36603600	Weak transcription	Brain Germinal Matrix	brain
4	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
5	chr2:36586600-36596400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:36589800-36596400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:36590000-36598200	Genic enhancers	Muscle Satellite Cultured Cells	--
8	chr2:36590800-36597200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr2:36592400-36599800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:36592400-36605800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:36592600-36596400	Enhancers	HSMMtube	muscle
12	chr2:36592600-36596600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:36592600-36597200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr2:36592600-36597200	Enhancers	Right Atrium	heart
15	chr2:36592800-36598200	Enhancers	NHDF-Ad	bronchial
16	chr2:36593200-36596400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr2:36593200-36598000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:36593200-36598000	Genic enhancers	HSMM	muscle
19	chr2:36593400-36599400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr2:36593400-36601800	Enhancers	Fetal Lung	lung
21	chr2:36593600-36597200	Enhancers	H9 Cell Line	embryonic stem cell
22	chr2:36593600-36598400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:36593600-36602400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr2:36593800-36596400	Enhancers	Fetal Intestine Small	intestine
25	chr2:36593800-36597000	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr2:36593800-36598400	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr2:36594000-36596400	Weak transcription	Brain Substantia Nigra	brain
28	chr2:36594000-36597000	Enhancers	Fetal Stomach	stomach
29	chr2:36594000-36603600	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr2:36594200-36601600	Weak transcription	Fetal Brain Male	brain
31	chr2:36594200-36605400	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr2:36594400-36602000	Enhancers	Fetal Heart	heart
33	chr2:36594600-36596600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr2:36594600-36597200	Enhancers	Psoas Muscle	Psoas
35	chr2:36594600-36597200	Enhancers	Right Ventricle	heart
36	chr2:36594800-36596800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr2:36594800-36597000	Enhancers	Left Ventricle	heart
38	chr2:36594800-36597200	Enhancers	Ovary	ovary
39	chr2:36594800-36597200	Transcr. at gene 5' and 3'	A549	lung
40	chr2:36594800-36597600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr2:36595000-36596400	Weak transcription	Brain Angular Gyrus	brain
42	chr2:36595000-36596600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr2:36595000-36596600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr2:36595000-36596600	Enhancers	Lung	lung
45	chr2:36595000-36597200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr2:36595200-36596400	Weak transcription	Brain Anterior Caudate	brain
47	chr2:36595200-36597200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr2:36595200-36606000	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr2:36595400-36596400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr2:36595400-36596600	Genic enhancers	HepG2	liver

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