Variant report

Variant	rs3770944
Chromosome Location	chr2:36616054-36616055
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36613783..36616310-chr2:36620739..36623500,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12623633	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13385670	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs13399173	0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13419520	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17018693	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2270329	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs28453873	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755210	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3755215	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3770942	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3770953	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3821161	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs59886115	0.98[ASN][1000 genomes]
rs6726672	0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6754446	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs6755171	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:36604000-36617000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr2:36604400-36616400	Weak transcription	Gastric	stomach
4	chr2:36604400-36620600	Weak transcription	Fetal Brain Male	brain
5	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:36604600-36617600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr2:36604600-36620800	Weak transcription	Brain Hippocampus Middle	brain
9	chr2:36607600-36620800	Weak transcription	Pancreas	Pancrea
10	chr2:36608600-36616200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:36608600-36616200	Weak transcription	Fetal Stomach	stomach
12	chr2:36609200-36619800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr2:36609400-36620000	Weak transcription	Lung	lung
14	chr2:36610400-36617800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr2:36611600-36616800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:36611600-36619800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr2:36611600-36632400	Weak transcription	Esophagus	oesophagus
18	chr2:36611600-36635400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:36612000-36616600	Enhancers	NHLF	lung
20	chr2:36613000-36617000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr2:36613000-36624000	Weak transcription	Small Intestine	intestine
22	chr2:36613200-36616400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:36613400-36616400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr2:36613600-36617000	Enhancers	H1 Cell Line	embryonic stem cell
25	chr2:36613600-36617200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr2:36613800-36617000	Genic enhancers	HepG2	liver
27	chr2:36614000-36616400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr2:36614000-36617400	Transcr. at gene 5' and 3'	A549	lung
29	chr2:36614000-36617600	Enhancers	Fetal Heart	heart
30	chr2:36614000-36617600	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr2:36614000-36617600	Genic enhancers	HSMM	muscle
32	chr2:36614000-36617800	Enhancers	Placenta Amnion	Placenta Amnion
33	chr2:36614200-36616200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr2:36614200-36616200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr2:36614200-36616200	Genic enhancers	Osteobl	bone
36	chr2:36614200-36616400	Enhancers	NH-A	brain
37	chr2:36614200-36616800	Enhancers	Adipose Nuclei	Adipose
38	chr2:36614400-36616200	Enhancers	Muscle Satellite Cultured Cells	--
39	chr2:36614400-36616200	Enhancers	Rectal Smooth Muscle	rectum
40	chr2:36614400-36616800	Weak transcription	Spleen	Spleen
41	chr2:36614600-36616200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr2:36614800-36616400	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr2:36614800-36616400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr2:36614800-36616800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr2:36614800-36620000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr2:36614800-36620200	Weak transcription	Right Ventricle	heart
47	chr2:36614800-36621400	Weak transcription	Stomach Mucosa	stomach
48	chr2:36615000-36616400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr2:36615000-36616400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr2:36615000-36617400	Enhancers	Hela-S3	cervix

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