Variant report

Variant	rs59886115
Chromosome Location	chr2:36618359-36618360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36591186..36592777-chr2:36616615..36618632,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12623633	0.98[ASN][1000 genomes]
rs13385670	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13399173	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13419520	0.93[ASN][1000 genomes]
rs17018663	0.85[EUR][1000 genomes]
rs17018693	0.98[ASN][1000 genomes]
rs28453873	0.98[ASN][1000 genomes]
rs3755210	0.98[ASN][1000 genomes]
rs3755215	0.98[ASN][1000 genomes]
rs3770923	0.86[EUR][1000 genomes]
rs3770942	0.98[ASN][1000 genomes]
rs3770944	0.98[ASN][1000 genomes]
rs3821161	0.93[ASN][1000 genomes]
rs6726672	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6755171	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:36604400-36620600	Weak transcription	Fetal Brain Male	brain
3	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:36604600-36620800	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:36607600-36620800	Weak transcription	Pancreas	Pancrea
7	chr2:36609200-36619800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:36609400-36620000	Weak transcription	Lung	lung
9	chr2:36611600-36619800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:36611600-36632400	Weak transcription	Esophagus	oesophagus
11	chr2:36611600-36635400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr2:36613000-36624000	Weak transcription	Small Intestine	intestine
13	chr2:36614800-36620000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:36614800-36620200	Weak transcription	Right Ventricle	heart
15	chr2:36614800-36621400	Weak transcription	Stomach Mucosa	stomach
16	chr2:36616400-36620800	Weak transcription	Right Atrium	heart
17	chr2:36616400-36621000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:36616600-36618800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:36616600-36619600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr2:36616600-36619800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr2:36616600-36620200	Weak transcription	Brain Germinal Matrix	brain
22	chr2:36616600-36620800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr2:36616800-36620800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr2:36616800-36624200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr2:36616800-36631200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr2:36616800-36635000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:36617000-36619200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr2:36617000-36619600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr2:36617000-36619800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr2:36617000-36620000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr2:36617000-36620000	Weak transcription	Brain Anterior Caudate	brain
32	chr2:36617000-36620200	Weak transcription	Fetal Brain Female	brain
33	chr2:36617000-36620800	Weak transcription	Ovary	ovary
34	chr2:36617000-36633400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr2:36617200-36619400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr2:36617200-36619800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr2:36617200-36620000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr2:36617200-36620000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr2:36617200-36620000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr2:36617200-36620000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr2:36617200-36620000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr2:36617200-36620000	Weak transcription	Left Ventricle	heart
43	chr2:36617200-36620000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr2:36617200-36620000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr2:36617200-36620000	Weak transcription	Spleen	Spleen
46	chr2:36617200-36620000	Weak transcription	HMEC	breast
47	chr2:36617200-36622200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr2:36617200-36623800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr2:36617200-36624000	Weak transcription	Fetal Intestine Large	intestine
50	chr2:36617200-36624000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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