The 2.0 version of rSNPBase

Variant report

Variant rs28453873
Chromosome Location chr2:36616752-36616753
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:36586200-36626600 Weak transcription Primary B cells from cord blood blood
2 chr2:36604000-36617000 Weak transcription Primary hematopoietic stem cells blood
3 chr2:36604400-36620600 Weak transcription Fetal Brain Male brain
4 chr2:36604400-36640400 Weak transcription Brain Inferior Temporal Lobe brain
5 chr2:36604400-36640600 Weak transcription Brain Cingulate Gyrus brain
6 chr2:36604600-36617600 Genic enhancers Breast Myoepithelial Primary Cells Breast
7 chr2:36604600-36620800 Weak transcription Brain Hippocampus Middle brain
8 chr2:36607600-36620800 Weak transcription Pancreas Pancrea
9 chr2:36609200-36619800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
10 chr2:36609400-36620000 Weak transcription Lung lung
11 chr2:36610400-36617800 Enhancers ES-I3 Cell Line embryonic stem cell
12 chr2:36611600-36616800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr2:36611600-36619800 Weak transcription H9 Cell Line embryonic stem cell
14 chr2:36611600-36632400 Weak transcription Esophagus oesophagus
15 chr2:36611600-36635400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
16 chr2:36613000-36617000 Enhancers HUES48 Cell Line embryonic stem cell
17 chr2:36613000-36624000 Weak transcription Small Intestine intestine
18 chr2:36613600-36617000 Enhancers H1 Cell Line embryonic stem cell
19 chr2:36613600-36617200 Enhancers Skeletal Muscle Male skeletal muscle
20 chr2:36613800-36617000 Genic enhancers HepG2 liver
21 chr2:36614000-36617400 Transcr. at gene 5' and 3' A549 lung
22 chr2:36614000-36617600 Enhancers Fetal Heart heart
23 chr2:36614000-36617600 Enhancers Skeletal Muscle Female skeletal muscle
24 chr2:36614000-36617600 Genic enhancers HSMM muscle
25 chr2:36614000-36617800 Enhancers Placenta Amnion Placenta Amnion
26 chr2:36614200-36616800 Enhancers Adipose Nuclei Adipose
27 chr2:36614400-36616800 Weak transcription Spleen Spleen
28 chr2:36614800-36616800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
29 chr2:36614800-36620000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
30 chr2:36614800-36620200 Weak transcription Right Ventricle heart
31 chr2:36614800-36621400 Weak transcription Stomach Mucosa stomach
32 chr2:36615000-36617400 Enhancers Hela-S3 cervix
33 chr2:36615200-36617000 Enhancers iPS-20b Cell Line embryonic stem cell
34 chr2:36615400-36616800 Enhancers iPS-15b Cell Line embryonic stem cell
35 chr2:36615400-36616800 Enhancers HMEC breast
36 chr2:36615400-36617400 Enhancers Colon Smooth Muscle Colon
37 chr2:36615400-36617800 Enhancers Psoas Muscle Psoas
38 chr2:36615600-36616800 Transcr. at gene 5' and 3' Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr2:36615600-36617000 Enhancers Fetal Adrenal Gland Adrenal Gland
40 chr2:36615600-36617000 Enhancers Fetal Brain Female brain
41 chr2:36615600-36617000 Enhancers Ovary ovary
42 chr2:36615600-36617000 Genic enhancers NHEK skin
43 chr2:36615600-36617200 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
44 chr2:36615600-36617200 Enhancers Fetal Intestine Large intestine
45 chr2:36615600-36617200 Enhancers Fetal Intestine Small intestine
46 chr2:36615600-36617200 Enhancers Fetal Lung lung
47 chr2:36615600-36617200 Enhancers Left Ventricle heart
48 chr2:36615600-36617200 Enhancers Stomach Smooth Muscle stomach
49 chr2:36615600-36617600 Enhancers Fetal Muscle Leg muscle
50 chr2:36615800-36616800 Enhancers Pancreatic Islets Pancreatic Islet

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Last update: Aug 31, 2015