Variant report

Variant	rs2271901
Chromosome Location	chr15:78487160-78487161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11852636	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12442037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16969507	1.00[CEU][hapmap]
rs16969508	1.00[CEU][hapmap]
rs16969548	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs2018983	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2304823	1.00[CEU][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2304825	0.92[JPT][hapmap]
rs3784328	1.00[CEU][hapmap]
rs3816253	0.92[JPT][hapmap]
rs56803002	0.83[ASN][1000 genomes]
rs59184904	0.82[AFR][1000 genomes]
rs59824250	0.84[ASN][1000 genomes]
rs7359294	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv948437	chr15:78435527-78504662	Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv904430	chr15:78466127-78507316	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78470400-78493800	Weak transcription	Brain Substantia Nigra	brain
2	chr15:78486200-78487200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:78486200-78487600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:78486600-78487200	Enhancers	Brain Hippocampus Middle	brain
5	chr15:78486600-78487200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr15:78486600-78488000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:78486800-78488400	Enhancers	Fetal Thymus	thymus
8	chr15:78487000-78487600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr15:78487000-78493600	Weak transcription	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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