Variant report

Variant	rs56803002
Chromosome Location	chr15:78458300-78458301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78441624..78443874-chr15:78458194..78460448,2	K562	blood:
2	chr15:78455141..78458694-chr15:78463989..78467554,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103740	Chromatin interaction
ENSG00000166411	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11638921	0.81[ASN][1000 genomes]
rs11852636	0.83[ASN][1000 genomes]
rs12439537	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12442037	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12904700	0.83[ASN][1000 genomes]
rs16969548	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2271901	0.83[ASN][1000 genomes]
rs2304823	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2304825	0.83[ASN][1000 genomes]
rs3816253	0.83[ASN][1000 genomes]
rs59824250	0.99[ASN][1000 genomes]
rs74024174	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv948437	chr15:78435527-78504662	Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78442600-78458400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:78442800-78463400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:78442800-78465600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:78445800-78464000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:78446600-78465200	Strong transcription	Fetal Intestine Large	intestine
6	chr15:78446800-78466000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:78447000-78475200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:78447200-78459600	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr15:78447400-78459200	Strong transcription	Primary B cells from peripheral blood	blood
10	chr15:78447600-78459600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr15:78447600-78464400	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr15:78447800-78459000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr15:78447800-78459600	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr15:78448000-78459800	Strong transcription	Duodenum Mucosa	Duodenum
15	chr15:78448000-78463000	Strong transcription	Fetal Muscle Leg	muscle
16	chr15:78448000-78464200	Strong transcription	Liver	Liver
17	chr15:78448000-78465200	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr15:78448000-78465800	Strong transcription	Fetal Muscle Trunk	muscle
19	chr15:78448400-78461000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr15:78448400-78461000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr15:78448600-78465400	Strong transcription	Placenta	Placenta
22	chr15:78448800-78463000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr15:78448800-78464200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr15:78448800-78466600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr15:78449000-78467800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:78449200-78458400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr15:78449200-78458800	Strong transcription	GM12878-XiMat	blood
28	chr15:78449400-78465200	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr15:78449800-78465400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:78450000-78458400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr15:78450000-78458400	Strong transcription	Dnd41	blood
32	chr15:78450000-78464600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:78450000-78465200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr15:78450000-78465200	Strong transcription	Osteobl	bone
35	chr15:78450000-78466200	Strong transcription	Left Ventricle	heart
36	chr15:78450200-78459800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:78450200-78462800	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr15:78450200-78464200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr15:78450200-78465200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr15:78450200-78465400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr15:78450200-78465400	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr15:78450600-78465200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:78451000-78464400	Strong transcription	Adipose Nuclei	Adipose
44	chr15:78451000-78466200	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr15:78451200-78459000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr15:78451200-78460200	Strong transcription	Brain Hippocampus Middle	brain
47	chr15:78451200-78467000	Strong transcription	Stomach Smooth Muscle	stomach
48	chr15:78451200-78467600	Strong transcription	Brain Cingulate Gyrus	brain
49	chr15:78451400-78459000	Strong transcription	Primary T cells from cord blood	blood
50	chr15:78451400-78459600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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