Variant report

Variant	rs74024174
Chromosome Location	chr15:78442201-78442202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:78441624..78443874-chr15:78458194..78460448,2	K562	blood:
2	chr15:78421103..78425437-chr15:78438436..78443517,9	MCF-7	breast:
3	chr15:78440397..78443186-chr15:78499689..78503898,3	MCF-7	breast:
4	chr15:78439170..78443635-chr15:78452310..78455814,4	K562	blood:
5	chr15:78441601..78443214-chr15:78498877..78500521,2	K562	blood:
6	chr15:78441557..78443629-chr15:78465322..78467706,2	MCF-7	breast:
7	chr15:78440356..78444633-chr15:78445807..78449726,8	K562	blood:
8	chr15:78440859..78443747-chr15:78450376..78455479,5	K562	blood:
9	chr15:78422180..78427678-chr15:78438636..78444300,13	MCF-7	breast:
10	chr15:78422233..78425731-chr15:78438987..78443227,7	K562	blood:
11	chr15:78433535..78435923-chr15:78440184..78443056,4	K562	blood:
12	chr15:78422015..78425228-chr15:78439030..78443289,7	K562	blood:
13	chr15:78440410..78443288-chr15:78589688..78592209,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000260988	Chromatin interaction
ENSG00000166411	Chromatin interaction
ENSG00000140395	Chromatin interaction
ENSG00000136425	Chromatin interaction
ENSG00000103740	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12439537	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442037	0.84[EUR][1000 genomes]
rs16969548	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1982241	0.81[ASN][1000 genomes]
rs2304823	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56803002	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59824250	0.87[ASN][1000 genomes]
rs74024171	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv948437	chr15:78435527-78504662	Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv3340405	chr15:78440522-78443070	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78440200-78442400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:78440600-78442400	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr15:78440600-78442400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:78440600-78442400	Active TSS	Muscle Satellite Cultured Cells	--
5	chr15:78440600-78442400	Active TSS	Colonic Mucosa	Colon
6	chr15:78440600-78442400	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr15:78440600-78442400	Active TSS	Fetal Brain Male	brain
8	chr15:78440600-78442600	Active TSS	H9 Cell Line	embryonic stem cell
9	chr15:78440600-78442600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:78440800-78442400	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr15:78440800-78442400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:78440800-78442400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:78440800-78442400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:78440800-78442600	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr15:78440800-78442800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:78440800-78442800	Active TSS	Brain Germinal Matrix	brain
17	chr15:78440800-78442800	Active TSS	HSMMtube	muscle
18	chr15:78440800-78443400	Active TSS	Right Atrium	heart
19	chr15:78441000-78442400	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr15:78441000-78442400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:78441000-78442400	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr15:78441000-78442400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:78441000-78442400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr15:78441000-78442400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:78441000-78442400	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr15:78441000-78442400	Active TSS	Brain Substantia Nigra	brain
27	chr15:78441000-78442400	Active TSS	Fetal Kidney	kidney
28	chr15:78441000-78442400	Active TSS	Fetal Lung	lung
29	chr15:78441000-78442400	Active TSS	Fetal Stomach	stomach
30	chr15:78441000-78442400	Active TSS	Right Ventricle	heart
31	chr15:78441000-78442400	Active TSS	Stomach Mucosa	stomach
32	chr15:78441000-78442400	Active TSS	Thymus	Thymus
33	chr15:78441000-78442400	Active TSS	A549	lung
34	chr15:78441000-78442400	Active TSS	Dnd41	blood
35	chr15:78441000-78442400	Active TSS	HSMM	muscle
36	chr15:78441000-78442400	Active TSS	NHDF-Ad	bronchial
37	chr15:78441000-78442400	Active TSS	Osteobl	bone
38	chr15:78441000-78442600	Active TSS	Aorta	Aorta
39	chr15:78441000-78442600	Active TSS	NHLF	lung
40	chr15:78441000-78442800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr15:78441000-78442800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr15:78441000-78442800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr15:78441000-78442800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr15:78441000-78442800	Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr15:78441000-78442800	Active TSS	Ovary	ovary
46	chr15:78441000-78443200	Active TSS	GM12878-XiMat	blood
47	chr15:78441200-78442400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:78441200-78442400	Active TSS	Primary T helper cells PMA-I stimulated	--
49	chr15:78441200-78442400	Active TSS	Primary T killer memory cells from peripheral blood	blood
50	chr15:78441200-78442400	Active TSS	Brain Anterior Caudate	brain

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