Variant report

Variant	rs2273202
Chromosome Location	chr22:27837504-27837505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:27832758..27834628-chr22:27836553..27838416,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16985031	1.00[AFR][1000 genomes]
rs4820767	1.00[AFR][1000 genomes]
rs4822905	1.00[AFR][1000 genomes]
rs4822910	1.00[AFR][1000 genomes]
rs4822911	1.00[AFR][1000 genomes]
rs4822913	1.00[AFR][1000 genomes]
rs4822915	1.00[AFR][1000 genomes]
rs4822916	1.00[AFR][1000 genomes]
rs4822920	1.00[AFR][1000 genomes]
rs55924866	1.00[AFR][1000 genomes]
rs5762258	1.00[AFR][1000 genomes]
rs5762260	1.00[AFR][1000 genomes]
rs723183	1.00[AFR][1000 genomes]
rs73160595	1.00[AFR][1000 genomes]
rs73162308	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413125	chr22:27404463-28121577	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv459860	chr22:27527005-28181436	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv588872	chr22:27527005-28181436	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv834167	chr22:27758395-27910985	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv459864	chr22:27760086-27865344	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv588875	chr22:27760086-27865344	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv471192	chr22:27821656-27865344	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:27829600-27844000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr22:27832400-27838800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr22:27832800-27843400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr22:27832800-27844000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr22:27833000-27838600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr22:27833800-27840200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr22:27834800-27839600	Weak transcription	Right Atrium	heart
8	chr22:27835000-27838200	Enhancers	Brain Germinal Matrix	brain
9	chr22:27835000-27838400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr22:27835000-27841800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr22:27835600-27838600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr22:27835800-27840200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr22:27836000-27837600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr22:27836200-27838000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr22:27836400-27837600	Enhancers	Primary hematopoietic stem cells	blood
16	chr22:27836400-27839000	Enhancers	Fetal Brain Male	brain
17	chr22:27836800-27837600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr22:27837000-27837800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr22:27837000-27837800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr22:27837000-27838600	Enhancers	Fetal Brain Female	brain
21	chr22:27837200-27840200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr22:27837400-27838000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr22:27837400-27838800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr22:27837400-27840000	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr22:27837400-27840000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
26	chr22:27837400-27840200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr22:27837400-27840200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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