Variant report

Variant	rs4822913
Chromosome Location	chr22:27967966-27967967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1547072	0.82[JPT][hapmap]
rs16985031	1.00[AFR][1000 genomes]
rs2273202	1.00[AFR][1000 genomes]
rs45475195	1.00[AFR][1000 genomes]
rs4820767	1.00[AFR][1000 genomes]
rs4822905	1.00[AFR][1000 genomes]
rs4822910	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4822911	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4822915	0.82[JPT][hapmap];1.00[AFR][1000 genomes]
rs4822916	1.00[AFR][1000 genomes]
rs4822920	1.00[AFR][1000 genomes]
rs55924866	1.00[AFR][1000 genomes]
rs5762258	1.00[AFR][1000 genomes]
rs5762260	1.00[AFR][1000 genomes]
rs723183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160595	1.00[AFR][1000 genomes]
rs73162308	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413125	chr22:27404463-28121577	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv459860	chr22:27527005-28181436	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv588872	chr22:27527005-28181436	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv834168	chr22:27859692-28061869	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv588877	chr22:27930080-28094845	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:27966600-27970000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr22:27967000-27968000	Enhancers	Fetal Lung	lung
3	chr22:27967200-27968400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr22:27967200-27971200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr22:27967200-27973800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr22:27967400-27968200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr22:27967600-27968000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr22:27967600-27968000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr22:27967600-27968000	Enhancers	Brain Germinal Matrix	brain
10	chr22:27967600-27968000	Enhancers	Fetal Brain Male	brain
11	chr22:27967600-27968800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr22:27967600-27969600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr22:27967800-27968000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr22:27967800-27969600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr22:27967800-27969800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr22:27967800-27972600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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