Variant report

Variant	rs2274796
Chromosome Location	chr21:15870638-15870639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13051520	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1735230	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs1882912	0.81[JPT][hapmap]
rs2822707	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs2822710	0.81[JPT][hapmap]
rs2822726	0.81[JPT][hapmap]
rs368657	0.80[EUR][1000 genomes]
rs405792	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs427307	0.88[CEU][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7276231	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs760343	0.81[JPT][hapmap]
rs8128692	0.81[JPT][hapmap]
rs8134290	0.81[JPT][hapmap]
rs9984947	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063703	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv544375	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1059591	chr21:15835325-15969195	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1056423	chr21:15838309-15948474	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv544376	chr21:15855470-15948474	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1065823	chr21:15863224-15948474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1057934	chr21:15863224-15969195	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15847800-15874800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr21:15853200-15885800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr21:15853400-15905400	Weak transcription	HUVEC	blood vessel
4	chr21:15854800-15875600	Weak transcription	Thymus	Thymus
5	chr21:15855400-15871000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr21:15856200-15875400	Weak transcription	Spleen	Spleen
7	chr21:15857200-15882600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr21:15861400-15874800	Weak transcription	Small Intestine	intestine
9	chr21:15861600-15881000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr21:15862600-15889400	Strong transcription	Dnd41	blood
11	chr21:15864800-15878400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr21:15864800-15881600	Strong transcription	Primary B cells from peripheral blood	blood
13	chr21:15865000-15878600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr21:15865600-15871200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr21:15866200-15874800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr21:15866200-15876800	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr21:15866800-15871400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr21:15866800-15871800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr21:15866800-15877800	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr21:15867000-15874000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr21:15867000-15877400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr21:15867000-15890600	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr21:15867200-15871400	Strong transcription	Primary hematopoietic stem cells	blood
24	chr21:15867200-15876800	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr21:15867600-15871200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr21:15867600-15872000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr21:15867600-15875600	Strong transcription	GM12878-XiMat	blood
28	chr21:15868200-15871600	Weak transcription	Adipose Nuclei	Adipose
29	chr21:15868600-15870800	Strong transcription	Fetal Thymus	thymus
30	chr21:15868800-15870800	Strong transcription	Primary B cells from cord blood	blood
31	chr21:15869200-15876800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr21:15869400-15878400	Strong transcription	K562	blood
33	chr21:15870200-15870800	Genic enhancers	Primary monocytes fromperipheralblood	blood
34	chr21:15870200-15871000	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr21:15870600-15871000	Genic enhancers	Monocytes-CD14+_RO01746	blood
36	chr21:15870600-15872000	Weak transcription	Primary T cells from cord blood	blood
37	chr21:15870600-15872800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr21:15870600-15875200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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