Variant report

Variant	rs2275674
Chromosome Location	chr1:159527480-159527481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12406565	0.88[JPT][hapmap]
rs12564019	0.88[JPT][hapmap]
rs12565926	0.94[JPT][hapmap]
rs1446960	0.92[ASN][1000 genomes]
rs16842232	0.93[ASN][1000 genomes]
rs2084257	0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs4128726	0.88[JPT][hapmap]
rs56034802	0.95[ASN][1000 genomes]
rs7548003	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005195	chr1:159452759-159910337	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2275674	ARHGEF11	cis	cerebellum	SCAN
rs2275674	HSPA6	cis	cerebellum	SCAN
rs2275674	FCRLB	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159526600-159527800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:159527000-159528000	Flanking Active TSS	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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