Variant report

Variant	rs2276279
Chromosome Location	chr11:76877263-76877264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12574736	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3737454	0.81[GIH][hapmap];0.84[JPT][hapmap];0.82[MEX][hapmap]
rs3781696	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs7930391	0.84[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.92[ASN][1000 genomes]
rs7941134	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76864800-76882200	Weak transcription	HepG2	liver
2	chr11:76865000-76882800	Strong transcription	Fetal Intestine Large	intestine
3	chr11:76865600-76882000	Strong transcription	Fetal Intestine Small	intestine
4	chr11:76869400-76889200	Weak transcription	Pancreas	Pancrea
5	chr11:76872200-76878600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:76873200-76877800	Weak transcription	Spleen	Spleen
7	chr11:76873600-76883000	Weak transcription	Ovary	ovary
8	chr11:76874800-76877600	Weak transcription	Liver	Liver
9	chr11:76875200-76878200	Weak transcription	Placenta	Placenta
10	chr11:76876400-76877600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:76876400-76882800	Weak transcription	Esophagus	oesophagus
12	chr11:76877000-76878600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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