Variant report

Variant	rs3781696
Chromosome Location	chr11:76882308-76882309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76877108..76882328-chr11:76882354..76886286,6	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2156568	0.89[CHB][hapmap]
rs2276279	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs3737454	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs4944146	0.80[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs6592710	0.82[ASN][1000 genomes]
rs7104528	0.84[CHB][hapmap]
rs7924655	0.90[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs7930391	1.00[CEU][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7941134	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76865000-76882800	Strong transcription	Fetal Intestine Large	intestine
2	chr11:76869400-76889200	Weak transcription	Pancreas	Pancrea
3	chr11:76873600-76883000	Weak transcription	Ovary	ovary
4	chr11:76876400-76882800	Weak transcription	Esophagus	oesophagus
5	chr11:76877600-76884000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:76879000-76884200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:76879200-76882800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr11:76879200-76882800	Weak transcription	Spleen	Spleen
9	chr11:76879200-76884000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:76879200-76884200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:76879400-76883600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:76879400-76883600	Weak transcription	HUVEC	blood vessel
13	chr11:76880200-76882800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr11:76880200-76883800	Enhancers	Placenta	Placenta
15	chr11:76880200-76887600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:76880400-76916600	Weak transcription	Right Atrium	heart
17	chr11:76881000-76883600	Enhancers	H9 Cell Line	embryonic stem cell
18	chr11:76881000-76883600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr11:76881200-76883800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:76881200-76885600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:76881200-76885800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:76881200-76888000	Enhancers	H1 Cell Line	embryonic stem cell
23	chr11:76881400-76882800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr11:76881400-76882800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr11:76881400-76883600	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr11:76881400-76883800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr11:76881400-76884000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr11:76881600-76882600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:76881600-76882600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:76881600-76883400	Weak transcription	HMEC	breast
31	chr11:76881600-76883600	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr11:76881600-76884200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr11:76881600-76884400	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr11:76881600-76885200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:76882000-76885400	Genic enhancers	Fetal Intestine Small	intestine
36	chr11:76882000-76885800	Enhancers	Liver	Liver
37	chr11:76882200-76882400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:76882200-76882800	Enhancers	HepG2	liver
39	chr11:76882200-76886000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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