Variant report

Variant	rs7924655
Chromosome Location	chr11:76877804-76877805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10793238	0.91[EUR][1000 genomes]
rs11607721	0.81[CEU][hapmap]
rs2156568	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes]
rs3737454	0.81[JPT][hapmap]
rs3781696	0.90[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs4944144	0.93[CEU][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes]
rs4944146	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4944147	0.81[CEU][hapmap]
rs4945151	0.92[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4945152	0.92[EUR][1000 genomes]
rs4945153	0.96[CEU][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes]
rs6592710	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7104528	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes]
rs762667	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7937262	0.96[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes]
rs7943982	0.96[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76864800-76882200	Weak transcription	HepG2	liver
2	chr11:76865000-76882800	Strong transcription	Fetal Intestine Large	intestine
3	chr11:76865600-76882000	Strong transcription	Fetal Intestine Small	intestine
4	chr11:76869400-76889200	Weak transcription	Pancreas	Pancrea
5	chr11:76872200-76878600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:76873600-76883000	Weak transcription	Ovary	ovary
7	chr11:76875200-76878200	Weak transcription	Placenta	Placenta
8	chr11:76876400-76882800	Weak transcription	Esophagus	oesophagus
9	chr11:76877000-76878600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:76877400-76878000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:76877400-76879400	Enhancers	Primary hematopoietic stem cells	blood
12	chr11:76877600-76879200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:76877600-76879200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:76877600-76879200	Strong transcription	Liver	Liver
15	chr11:76877600-76884000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:76877800-76878400	Enhancers	Fetal Thymus	thymus
17	chr11:76877800-76879000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr11:76877800-76879200	Enhancers	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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