Variant report

Variant	rs4945152
Chromosome Location	chr11:76874636-76874637
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10793238	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2071151	0.83[ASN][1000 genomes]
rs2156568	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2276278	0.86[ASN][1000 genomes]
rs3737454	0.81[ASN][1000 genomes]
rs4944144	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4944146	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4945151	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945153	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592710	0.90[EUR][1000 genomes]
rs7104528	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs762667	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7924655	0.92[EUR][1000 genomes]
rs7937262	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7943982	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76864800-76882200	Weak transcription	HepG2	liver
2	chr11:76865000-76882800	Strong transcription	Fetal Intestine Large	intestine
3	chr11:76865600-76882000	Strong transcription	Fetal Intestine Small	intestine
4	chr11:76869400-76889200	Weak transcription	Pancreas	Pancrea
5	chr11:76871400-76874800	Strong transcription	Liver	Liver
6	chr11:76872200-76878600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:76873200-76876200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:76873200-76877800	Weak transcription	Spleen	Spleen
9	chr11:76873600-76883000	Weak transcription	Ovary	ovary
10	chr11:76873800-76877000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:76874200-76875200	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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