Variant report

Variant	rs2276278
Chromosome Location	chr11:76872169-76872170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2071151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2156568	0.82[JPT][hapmap]
rs2276279	0.81[GIH][hapmap];0.84[JPT][hapmap];0.82[MEX][hapmap]
rs3737454	1.00[CEU][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3781696	0.90[JPT][hapmap]
rs4944144	0.90[JPT][hapmap]
rs4944146	0.81[JPT][hapmap]
rs4945151	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs4945152	0.86[ASN][1000 genomes]
rs4945153	0.89[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs7104528	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs7924655	0.81[JPT][hapmap]
rs7930391	0.83[JPT][hapmap];0.91[MEX][hapmap];0.81[AMR][1000 genomes]
rs7937262	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs7941134	0.82[CHD][hapmap];0.95[GIH][hapmap];0.84[JPT][hapmap];0.82[MEX][hapmap];0.82[ASN][1000 genomes]
rs7943982	0.90[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76852800-76873000	Weak transcription	Ovary	ovary
2	chr11:76864800-76882200	Weak transcription	HepG2	liver
3	chr11:76865000-76882800	Strong transcription	Fetal Intestine Large	intestine
4	chr11:76865600-76882000	Strong transcription	Fetal Intestine Small	intestine
5	chr11:76866000-76872400	Weak transcription	Spleen	Spleen
6	chr11:76869400-76889200	Weak transcription	Pancreas	Pancrea
7	chr11:76870000-76872400	Bivalent Enhancer	Placenta	Placenta
8	chr11:76871400-76874800	Strong transcription	Liver	Liver
9	chr11:76872000-76872200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:76872000-76874400	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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