Variant report

Variant	rs2156568
Chromosome Location	chr11:76876278-76876279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10793238	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11607721	0.85[CEU][hapmap]
rs2071151	0.83[ASN][1000 genomes]
rs3737454	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs3781696	0.89[CHB][hapmap]
rs4944144	0.96[CEU][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4944146	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes]
rs4944147	0.85[CEU][hapmap]
rs4945151	0.96[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945152	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4945153	1.00[CEU][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592710	0.84[EUR][1000 genomes]
rs7104528	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs762667	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7924655	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes]
rs7937262	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7941134	0.83[CHB][hapmap]
rs7943982	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76864800-76882200	Weak transcription	HepG2	liver
2	chr11:76865000-76882800	Strong transcription	Fetal Intestine Large	intestine
3	chr11:76865600-76882000	Strong transcription	Fetal Intestine Small	intestine
4	chr11:76869400-76889200	Weak transcription	Pancreas	Pancrea
5	chr11:76872200-76878600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:76873200-76877800	Weak transcription	Spleen	Spleen
7	chr11:76873600-76883000	Weak transcription	Ovary	ovary
8	chr11:76873800-76877000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:76874800-76877600	Weak transcription	Liver	Liver
10	chr11:76875200-76878200	Weak transcription	Placenta	Placenta
11	chr11:76876200-76876400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:76876200-76876400	Enhancers	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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