Variant report

Variant	rs2276772
Chromosome Location	chr3:112052103-112052104
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10511311	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12491166	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13072567	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13092081	0.83[AMR][1000 genomes]
rs13095299	0.83[AMR][1000 genomes]
rs13098589	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1343852	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2272022	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2399412	0.88[AMR][1000 genomes]
rs2399416	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34345145	0.93[EUR][1000 genomes]
rs4682399	0.88[AMR][1000 genomes]
rs7647411	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112050600-112054200	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr3:112050800-112054200	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr3:112051000-112053600	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr3:112051000-112053800	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr3:112051000-112054000	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr3:112051000-112054200	Active TSS	Placenta	Placenta
7	chr3:112051400-112053400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:112051400-112053600	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr3:112051400-112053600	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr3:112051400-112053600	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr3:112051400-112054200	Active TSS	Fetal Brain Female	brain
12	chr3:112051400-112054200	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr3:112051400-112054400	Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr3:112051400-112054400	Active TSS	GM12878-XiMat	blood
15	chr3:112051400-112054600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:112051600-112052400	Active TSS	Brain Germinal Matrix	brain
17	chr3:112051600-112052600	Flanking Active TSS	HUVEC	blood vessel
18	chr3:112051600-112052800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:112051600-112052800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:112051600-112052800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:112051600-112052800	Active TSS	HSMM	muscle
22	chr3:112051600-112053000	Active TSS	Primary hematopoietic stem cells	blood
23	chr3:112051600-112053000	Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr3:112051600-112053000	Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr3:112051600-112053000	Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr3:112051600-112053200	Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chr3:112051600-112053200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr3:112051600-112053200	Flanking Active TSS	Adipose Nuclei	Adipose
29	chr3:112051600-112053200	Active TSS	Brain Anterior Caudate	brain
30	chr3:112051600-112053200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
31	chr3:112051600-112053200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
32	chr3:112051600-112053200	Bivalent/Poised TSS	Osteobl	bone
33	chr3:112051600-112053400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr3:112051600-112053600	Active TSS	H1 Cell Line	embryonic stem cell
35	chr3:112051600-112053600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr3:112051600-112053600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr3:112051600-112053600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr3:112051600-112053600	Active TSS	Brain Substantia Nigra	brain
39	chr3:112051600-112053600	ZNF genes & repeats	Fetal Brain Male	brain
40	chr3:112051600-112053600	Active TSS	Fetal Thymus	thymus
41	chr3:112051600-112053600	Active TSS	Rectal Mucosa Donor 31	rectum
42	chr3:112051600-112053800	Active TSS	H9 Cell Line	embryonic stem cell
43	chr3:112051600-112053800	Active TSS	Fetal Intestine Small	intestine
44	chr3:112051600-112054000	Active TSS	Aorta	Aorta
45	chr3:112051600-112054000	Active TSS	Fetal Kidney	kidney
46	chr3:112051600-112054000	Active TSS	Fetal Lung	lung
47	chr3:112051600-112054000	Active TSS	Ovary	ovary
48	chr3:112051600-112054200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr3:112051600-112054200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr3:112051600-112054200	Active TSS	Pancreatic Islets	Pancreatic Islet

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