Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10511311	0.81[AMR][1000 genomes]
rs12106673	0.87[EUR][1000 genomes]
rs12106967	0.87[EUR][1000 genomes]
rs13069751	0.98[EUR][1000 genomes]
rs13069935	0.97[EUR][1000 genomes]
rs13070091	0.98[EUR][1000 genomes]
rs13072567	0.82[AMR][1000 genomes]
rs13095299	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13100916	0.81[EUR][1000 genomes]
rs1317243	0.90[EUR][1000 genomes]
rs1879513	0.98[EUR][1000 genomes]
rs2276772	0.83[AMR][1000 genomes]
rs2399412	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682398	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4682399	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6438064	0.97[EUR][1000 genomes]
rs6438065	0.98[EUR][1000 genomes]
rs6762106	0.98[EUR][1000 genomes]
rs6773206	0.98[EUR][1000 genomes]
rs6780745	0.96[EUR][1000 genomes]
rs6798354	0.98[EUR][1000 genomes]
rs6798486	0.98[EUR][1000 genomes]
rs6805117	0.98[EUR][1000 genomes]
rs6805142	0.93[EUR][1000 genomes]
rs8179893	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8179913	0.97[EUR][1000 genomes]
rs9814721	0.98[EUR][1000 genomes]
rs9852176	0.98[EUR][1000 genomes]
rs9856838	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv3949	chr3:111998512-112044060	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112033000-112036400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr3:112033800-112037800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:112034200-112037000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:112034600-112035000	Enhancers	HMEC	breast
5	chr3:112034800-112036200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr3:112034800-112036200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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