Variant report

Variant	rs2278885
Chromosome Location	chr2:7238191-7238192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:7237529..7239877-chr2:7241428..7244558,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1453122	0.92[JPT][hapmap]
rs1453124	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17624427	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4668520	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4669132	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55821141	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59601286	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6431849	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7585673	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv437276	chr2:7229170-7246387	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv437277	chr2:7229170-7246387	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7234800-7249800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:7237200-7238200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr2:7237200-7238200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr2:7237200-7238200	Enhancers	Fetal Brain Male	brain
5	chr2:7237200-7238200	Enhancers	Fetal Muscle Leg	muscle
6	chr2:7237200-7238400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr2:7237400-7238200	Flanking Active TSS	Brain Cingulate Gyrus	brain
8	chr2:7237400-7238200	Enhancers	Fetal Heart	heart
9	chr2:7237600-7238200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:7237600-7238200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr2:7237600-7238200	Enhancers	Pancreas	Pancrea
12	chr2:7237800-7249400	Weak transcription	Fetal Kidney	kidney
13	chr2:7238000-7238200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr2:7238000-7238200	Enhancers	Colon Smooth Muscle	Colon
15	chr2:7238000-7238200	Weak transcription	Gastric	stomach
16	chr2:7238000-7238200	Enhancers	GM12878-XiMat	blood
17	chr2:7238000-7238400	Enhancers	Fetal Brain Female	brain
18	chr2:7238000-7245200	Weak transcription	Primary T cells from cord blood	blood
19	chr2:7238000-7245200	Weak transcription	Dnd41	blood
20	chr2:7238000-7246800	Weak transcription	Thymus	Thymus
21	chr2:7238000-7249400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr2:7238000-7252000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr2:7238000-7259000	Weak transcription	Brain Anterior Caudate	brain
24	chr2:7238000-7259600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr2:7238000-7260400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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