Variant report

Variant	rs4669132
Chromosome Location	chr2:7234114-7234115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1453122	1.00[JPT][hapmap]
rs1453124	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17624427	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2278885	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4668520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55821141	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59601286	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6431849	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7585673	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv437276	chr2:7229170-7246387	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv437277	chr2:7229170-7246387	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3459456	chr2:7229849-7235881	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3459455	chr2:7229873-7235699	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3459457	chr2:7229873-7235699	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv15834	chr2:7230036-7235715	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2421692	chr2:7230988-7234476	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2760623	chr2:7233524-7234476	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7224600-7237400	Weak transcription	Dnd41	blood
2	chr2:7226400-7235600	Weak transcription	Spleen	Spleen
3	chr2:7226400-7237600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr2:7232000-7237600	Weak transcription	Ovary	ovary
5	chr2:7232800-7234200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr2:7233600-7235600	Enhancers	Fetal Kidney	kidney
7	chr2:7233800-7236200	Weak transcription	Lung	lung
8	chr2:7233800-7237800	Weak transcription	Gastric	stomach
9	chr2:7234000-7234200	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:7234000-7234200	Enhancers	Pancreas	Pancrea
11	chr2:7234000-7234400	Enhancers	Fetal Heart	heart
12	chr2:7234000-7234600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:7234000-7234600	Enhancers	Fetal Lung	lung
14	chr2:7234000-7234800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:7234000-7234800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:7234000-7234800	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr2:7234000-7235200	Enhancers	Fetal Muscle Leg	muscle
18	chr2:7234000-7235400	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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