Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1197475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs162175	0.82[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs162176	1.00[AMR][1000 genomes]
rs1674557	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs189012	1.00[AMR][1000 genomes]
rs228117	0.82[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2556602	0.82[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs327430	1.00[AMR][1000 genomes]
rs327438	1.00[AMR][1000 genomes]
rs327444	1.00[AMR][1000 genomes]
rs327445	1.00[AMR][1000 genomes]
rs327448	1.00[AMR][1000 genomes]
rs327449	1.00[AMR][1000 genomes]
rs327453	0.85[AFR][1000 genomes]
rs327455	1.00[AMR][1000 genomes]
rs327461	1.00[AMR][1000 genomes]
rs327466	1.00[AMR][1000 genomes]
rs327474	1.00[AMR][1000 genomes]
rs327475	1.00[AMR][1000 genomes]
rs327478	1.00[AMR][1000 genomes]
rs327479	1.00[AMR][1000 genomes]
rs327480	1.00[AMR][1000 genomes]
rs328253	1.00[AMR][1000 genomes]
rs442359	1.00[AMR][1000 genomes]
rs60529658	1.00[AMR][1000 genomes]
rs7141981	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7149056	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8005704	1.00[AMR][1000 genomes]
rs8022471	0.82[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81291800-81344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:81316600-81338800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr14:81321600-81382200	Weak transcription	Left Ventricle	heart
4	chr14:81326200-81336400	Weak transcription	NHDF-Ad	bronchial
5	chr14:81326600-81339800	Weak transcription	Fetal Thymus	thymus
6	chr14:81329200-81359400	Weak transcription	HSMM	muscle
7	chr14:81330400-81350600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr14:81331200-81344800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:81332600-81344400	Weak transcription	Ovary	ovary
10	chr14:81332600-81345800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr14:81332800-81337800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:81332800-81344000	Weak transcription	Thymus	Thymus
13	chr14:81333000-81344600	Weak transcription	Aorta	Aorta
14	chr14:81334000-81335400	Weak transcription	NHEK	skin
15	chr14:81334000-81337400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:81334200-81335800	ZNF genes & repeats	Dnd41	blood
17	chr14:81334200-81335800	Weak transcription	HMEC	breast
18	chr14:81334400-81335000	ZNF genes & repeats	A549	lung
19	chr14:81334800-81344400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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